Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G04
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   4.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   4.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -2

Query: 139 YMHSIITSVLCWKNDHSNLSQN*WS*SITLNIKLYFIL 26
           ++ +IIT ++ W+N       N +  ++ ++  L+ IL
Sbjct: 48  FVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLIL 85


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 145 MCYMHSIITSVLCWKND 95
           MCYM  I+ +    KND
Sbjct: 69  MCYMKCIMIATKAMKND 85


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 145 MCYMHSIITSVLCWKND 95
           MCYM  I+ +    KND
Sbjct: 43  MCYMKCIMIATKAMKND 59


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 426 GGNKL*ISQKLVNKFSNLLSLP 361
           GGN L   +KLV  F    SLP
Sbjct: 136 GGNHLPFHEKLVESFPRGGSLP 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,316
Number of Sequences: 438
Number of extensions: 1830
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)