Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G03
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    63   2e-11
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    32   0.051
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    28   0.63 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   3.4  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   5.9  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    25   7.8  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   7.8  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 218 KSTKVRVYSPEDLAQYNGLKIKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAF 397
           K  + R Y+P +L +YNG K   ++LA+ GT+++VT G K+Y  +  Y  F G D SR  
Sbjct: 36  KQPEWRDYTPAELKEYNGSKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGL 95

Query: 398 VTGDFKDESQNRDHVIDL-PCNDL 466
               F DE        +L  C+DL
Sbjct: 96  AKNSFDDEFIPDSDAEELDDCSDL 119


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 31.9 bits (69), Expect = 0.051
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 323 TKGKKYYSKRASYHYFVGKDGSRAFVTGDFKDESQNRDHVID 448
           T+ KK Y++R  YH+FV   G +     ++++  +  D++++
Sbjct: 103 TENKKKYAERHGYHFFVKSTGLKRRYAHEWRESWEKADYIME 144


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 362 HYFVGKDGSRAFVTGDFKDESQNRDHVIDLPCNDL 466
           +Y++ K G + F TG      Q  +++  +P N+L
Sbjct: 498 YYYLPKIGGKTFFTGPIPTVQQENEYISGVPLNEL 532


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 215 DKSTKVRVYSPEDLAQYNGLKIKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRA 394
           D  T+ RV + E  A+ +  KI  +  A   ++    K  +Y SK++SY  F+ KD    
Sbjct: 290 DSRTRARVVAIEKRAEIS--KIVGILRAPGWSL----KNVEYVSKKSSYAIFIPKDKRLP 343

Query: 395 FVT 403
           F+T
Sbjct: 344 FIT 346


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 365 YFVGKDGSRAFVTGDFKDESQNRDHVIDLP 454
           YFV   G     TGD+  E     HV ++P
Sbjct: 190 YFVEMAGVNILFTGDYSREEDRHLHVAEVP 219


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 362 HYFVGKDGSRAFVTGDFKDESQNRDHVIDLP 454
           HYFV +  S  F T D +DE+   D+    P
Sbjct: 116 HYFVAQKLSSVFGTPDLEDETDFFDYFSAAP 146


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 275 KIKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKD 382
           KI++    VLG  FD +K +K +  + ++ Y +  D
Sbjct: 102 KIQASDYEVLGLSFDTSKAQKAFKDKQNFPYHLLSD 137


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 468 NRSLQGRSITW--SLF*LSSLKSPVTNALDPSLPT 370
           N++    +I+W  +LF L S KSP+ NAL    P+
Sbjct: 278 NKNTTIGTISWLLNLFVLGSWKSPLLNALHYPFPS 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,830
Number of Sequences: 5004
Number of extensions: 34093
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)