Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G03
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0544 - 18655186-18655567,18656835-18657151                       49   2e-06
03_02_0826 + 11569961-11570301,11572220-11572454                       46   2e-05
10_08_0543 - 18649894-18650233,18651446-18651981                       45   3e-05
02_05_0089 - 25715637-25716333,25716481-25717238                       42   3e-04
02_05_1047 + 33745656-33745964                                         40   8e-04
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548...    35   0.039
03_02_0290 - 7130304-7130416,7130999-7131804,7132730-7132937,713...    29   2.5  
11_01_0409 - 3096372-3097052,3097324-3098652                           28   4.4  

>10_08_0544 - 18655186-18655567,18656835-18657151
          Length = 232

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 242 SPEDLAQYNGLKIKS-LYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGDFKD 418
           S E+L QY+G   K  L +A+ G I+DVT+ + +Y     Y  F GKD SRA     F+ 
Sbjct: 75  SEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEP 134

Query: 419 ESQNRD 436
           +    D
Sbjct: 135 QDLTGD 140


>03_02_0826 + 11569961-11570301,11572220-11572454
          Length = 191

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 248 EDLAQYNGLK-IKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGDF 412
           E LA Y+G    K + +A+ G ++DVT+G+ +Y  +  Y  F G+D +RA     F
Sbjct: 85  EQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALALMSF 140


>10_08_0543 - 18649894-18650233,18651446-18651981
          Length = 291

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 248 EDLAQYNGLKI-KSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGDFKDES 424
           E+L QY+G    K L +A+ G I+DV++ + +Y     Y  F GKD SRA     F+ + 
Sbjct: 150 EELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALAKMSFEPQD 209

Query: 425 QNRD 436
              D
Sbjct: 210 LTDD 213


>02_05_0089 - 25715637-25716333,25716481-25717238
          Length = 484

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 248 EDLAQYNGLKI-KSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGDFK 415
           E+L  Y+G    K L +A+ G I+DVT+ + +Y     Y  F G+D SRA     F+
Sbjct: 224 EELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALAKMSFE 280


>02_05_1047 + 33745656-33745964
          Length = 102

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 281 KSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRA 394
           K +Y++V G ++DVT G+ +Y    +Y  F G++ SRA
Sbjct: 20  KPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRA 57


>03_02_0079 +
           5485090-5485238,5486066-5486137,5486764-5486840,
           5486946-5486989,5487583-5487639,5487640-5487686,
           5488010-5488184,5489501-5489662,5489845-5489883
          Length = 273

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 302 LGTIFDVTKGKKYYSKRASYHYFVG 376
           L ++FDVTKGK  Y     YH+F G
Sbjct: 49  LSSVFDVTKGKSNYGPGGGYHHFAG 73


>03_02_0290 -
           7130304-7130416,7130999-7131804,7132730-7132937,
           7132983-7133153,7134091-7134187,7134814-7134873
          Length = 484

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 150 MLITTITKDNMYLTFICIIVQMQKSI*SYKIVATYITQIKLVPLLV 13
           M++     DNM+ TFI   + M+K I S++I A     I ++ +L+
Sbjct: 225 MILFAAVLDNMFSTFIEQGMVMEKHIGSFEIPAASFQSIDVIAVLI 270


>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +2

Query: 209 VIDKSTKVRVYSPEDLAQYNG------LKIKSLYLAVLGTIFDVTKGKKYYSKRASYHYF 370
           V+D+      Y  E   Q +G      L + S + + + +IFD  +G+  Y+    +H  
Sbjct: 379 VVDEEPAATDYEDEFTGQVHGRRLVELLAVSSDFDSFMISIFDGKRGQIVYNHHQGHHTV 438

Query: 371 VGKDGSRAFVTGDFKDESQNRDHVIDLPCND 463
           +        +TG ++  S +   +I++  N+
Sbjct: 439 IHDSQRNLVLTGPYRAISADGSFLIEVDTNN 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,687
Number of Sequences: 37544
Number of extensions: 166792
Number of successful extensions: 282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)