Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G03
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    66   9e-12
U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    47   6e-06
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    47   6e-06
AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    32   0.24 
AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 66.5 bits (155), Expect = 9e-12
 Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = +2

Query: 236 VYSPEDLAQYNGLK-IKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGDF 412
           V++PE L  ++G +  K +YLA+LG +++V   K+YY    SYH+F G+D +RAF TGDF
Sbjct: 100 VFTPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF 159

Query: 413 KD 418
           ++
Sbjct: 160 QE 161


>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = +2

Query: 248 EDLAQYNGLKIKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGD 409
           E+L +Y+G+K + +   + GTI+DVT+GK +Y    +Y    G D +RA  T D
Sbjct: 53  EELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMD 106


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = +2

Query: 248 EDLAQYNGLKIKSLYLAVLGTIFDVTKGKKYYSKRASYHYFVGKDGSRAFVTGD 409
           E+L +Y+G+K + +   + GTI+DVT+GK +Y    +Y    G D +RA  T D
Sbjct: 68  EELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMD 121


>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +2

Query: 167 LENIFHVNNFNLHSVIDKSTKVRVYSPEDLAQYNGLKIKSLYL 295
           +E++FH+ NF ++ +ID ST+  +   +DL + +  +   +Y+
Sbjct: 211 IEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCEIYI 253


>AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical
           protein K09H9.8 protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 118 VFNIYLYHSANAKKYMIL*NRCHVHNSNKISSFTGLTLV 2
           +FN Y+   A   KY  +  +CHV N++K+     + LV
Sbjct: 17  LFNFYVDFQAENPKYRCVFGKCHVVNASKVLLLLEIFLV 55


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +2

Query: 170 ENIFHVNNFNLHSVIDKSTKVR------VYSPEDLAQYNGLKIKSLYLAVLGTIFD 319
           +N+  +   NL S +DK+   R      V  P D A+Y+ LK   + LA +G + D
Sbjct: 291 DNVLILCTSNLESTLDKALVDRADIVKNVGQPSDFARYSMLKSSIMELARIGVVID 346


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
 Frame = +2

Query: 176 IFHVNNFNLHSVIDKSTKVRVYSPEDLAQYNGLKIKS--LYLAVLGTIFDVTKGKK---- 337
           +F   NF   SV+    K  VY  EDL+    L  +S  L    LG +F++ + K+    
Sbjct: 248 LFLQKNFKNPSVLSTFMKYYVYFVEDLSSSLVLARRSSTLLCQALGFLFEMAQDKRKIDA 307

Query: 338 YY---SKRASYHYFVGKDGSRAFVTGDFKDESQNRDHVIDLPCND 463
           YY   +K      F  +DG   +   D+ D     D + D+P  D
Sbjct: 308 YYDSANKTFIKKEFENEDG-EIYEFEDYDDFIDMLDEIPDVPYFD 351


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 58  DFIRSYTFLHLHYDTDKC*IHIIFCD 135
           DF++S  FL + Y  D C   I+FC+
Sbjct: 119 DFVKSEAFLLISYIIDICHYTILFCN 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,619,080
Number of Sequences: 27780
Number of extensions: 183087
Number of successful extensions: 363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)