Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G03
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   5.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   5.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   5.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   5.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   5.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   5.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   5.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 364 MIRSSFRIIFLAFCNIKNCSQNS*IKRLY 278
           M++S   I+++    I  CS N   KRLY
Sbjct: 1   MMKSLVGIMWIVLVLISGCSGNPDAKRLY 29



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 408 SPVTNALDPSLPTK 367
           SP T A  P LPT+
Sbjct: 447 SPATTAAPPQLPTE 460


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 151 YANNNYHKR*YVFNI 107
           Y NNNY+K+ Y +NI
Sbjct: 103 YNNNNYNKKLY-YNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 151 YANNNYHKR*YVFNI 107
           Y NNNY+K+ Y +NI
Sbjct: 103 YNNNNYNKKLY-YNI 116


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 151 YANNNYHKR*YVFNI 107
           Y NNNY+K+ Y +NI
Sbjct: 99  YNNNNYNKKLY-YNI 112


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 151 YANNNYHKR*YVFNI 107
           Y NNNY+K+ Y +NI
Sbjct: 99  YNNNNYNKKLY-YNI 112


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 151 YANNNYHKR*YVFNI 107
           Y NNNY+K+ Y +NI
Sbjct: 99  YNNNNYNKKLY-YNI 112


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 151 YANNNYHKR*YVFNI 107
           Y NNNY+K+ Y +NI
Sbjct: 99  YNNNNYNKKLY-YNI 112


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 151 YANNNYHKR*YVFN 110
           Y NNNY+K+ Y  N
Sbjct: 106 YNNNNYNKKLYYKN 119


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 466 QIITRKIYNMVSVLTLIFKISSNKC 392
           Q + R+ YN++  L+ I     N+C
Sbjct: 550 QGLFRRFYNLLGKLSTIEDADKNQC 574


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 331 AFCNIKNCS 305
           AFCNI +CS
Sbjct: 357 AFCNIVSCS 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,635
Number of Sequences: 438
Number of extensions: 2680
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)