Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G01
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.82 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.82 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.3  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = -1

Query: 607 CVGCILALLISKASWYAFCESCTTECLVSPVATSARY 497
           C  CI   + S   W  +C S    C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = -1

Query: 607 CVGCILALLISKASWYAFCESCTTECLVSPVATSARY 497
           C  CI   + S   W  +C S    C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 277 PDGHHGESFPLLNRKPKGRKENNRWQKNIG 366
           P GHH  S PLL     G    +R + N G
Sbjct: 516 PSGHHASSAPLLAATLAGGLCPHRRRANSG 545


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +3

Query: 312 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKVFYLKMKGDY 491
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 492 YRY 500
           + Y
Sbjct: 500 FDY 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,369
Number of Sequences: 438
Number of extensions: 4064
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)