Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F24
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    26   1.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   1.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   2.5  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   3.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   4.4  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   5.9  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    24   7.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   7.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   7.8  

>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 291 NQPELQLFLFAFFGVQRDSNRFLKYLLFLPRVLLSKAHMRSV--NLK 157
           NQ + QLF    FG+  ++  FL Y +       +++ M S+  NLK
Sbjct: 223 NQCQTQLFHLYSFGIPGNTKEFLAYRILYMLFTKNRSEMNSLLANLK 269


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 283 GLIYRLQNRPKHQFVVPSFL 342
           GL++  ++ P  QF+VPSFL
Sbjct: 66  GLVHGSKSPPSSQFLVPSFL 85


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 276 QLFLFAFFGVQRDSNRFLKYLLFLPRVL 193
           Q F F  F     S  F+ YL+FLP VL
Sbjct: 724 QTFAFVTFNKVCTSQYFMWYLVFLPLVL 751


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 216 GISEIYCYRVAPQRKRKGTTAARADLPFA 302
           GI   + Y+V P+ +++   A + D+PFA
Sbjct: 464 GIKAEFLYKVKPKPRQQFDAADKFDVPFA 492


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 300 QTVNQPELQLFLFAFFGVQRDSNRFLKYLL 211
           +T+   EL  ++   F VQ+DSNR+L  LL
Sbjct: 791 KTLPLRELSHYIVQRFLVQQDSNRYLHPLL 820


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 258 FFGVQRDSNRFLKYLLFLP--RVLLSKAHMRSVNL 160
           F+  Q   N +LKYLL  P   V +     RSVNL
Sbjct: 530 FYEKQTGDNPYLKYLLLDPSKHVEILTEQCRSVNL 564


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  SNYNTIVVGGTHTHKFKNLSLIT*MWVYFSN 152
           S+ N+  V  T THKFK L      +++FSN
Sbjct: 57  SSENSSSVRNTRTHKFKQLL----HYIFFSN 83


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -1

Query: 213 LFLPRVLLS-KAHMRSVNLK 157
           L+L +++L  KAHM +VN+K
Sbjct: 176 LYLEQIILKHKAHMNTVNIK 195


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 72  YYSCCVILLLSY 37
           +YSCC++ + SY
Sbjct: 221 FYSCCIVFISSY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,786
Number of Sequences: 5004
Number of extensions: 25745
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)