Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F24
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0551 - 9411085-9411430,9411679-9411800                           27   5.3  
09_02_0290 - 6963673-6963966,6964279-6964590,6964693-6964832,696...    26   7.1  

>03_02_0551 - 9411085-9411430,9411679-9411800
          Length = 155

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 149 QHHLRLTDLM*ALLKRTRGRKSRYFRNLLLSRCT 250
           QHH R  D+  ALLKR     +R   N   S C+
Sbjct: 26  QHHQRERDISTALLKRPSSVSARTLLNQYRSACS 59


>09_02_0290 -
           6963673-6963966,6964279-6964590,6964693-6964832,
           6965124-6965187,6965263-6965493,6965580-6965714,
           6966484-6966517,6966664-6966692
          Length = 412

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 228 IYCYRVAPQRKRKGTTAARAD 290
           ++C+   PQR   G+T A+AD
Sbjct: 387 VHCHEFQPQRVNPGSTRAKAD 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,801
Number of Sequences: 37544
Number of extensions: 162834
Number of successful extensions: 265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)