Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F24
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 60  CVILLLSYRFIHLLCDPASC 1
           C++++++Y F+ +LC P  C
Sbjct: 42  CIVVIITYIFLIILCSPLPC 61


>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 82  TTIVL*LLCDPTIELSFHT-FTMRSS 8
           T + L   CDP +EL F T F +RSS
Sbjct: 48  TVVQLEFTCDPEVELEFDTEFVLRSS 73


>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical
           protein K09C8.5 protein.
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +3

Query: 15  RIVNV*NDSSIVGSHSNYNTIVVG------GTHTHKFKNLSL 122
           R+VNV   +  + +HSN N  +VG      G   + F+NLS+
Sbjct: 182 RMVNVKQFADSLFAHSNQNIFIVGKCFFPKGLRNYVFRNLSI 223


>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical
           protein K09C8.5 protein.
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +3

Query: 15  RIVNV*NDSSIVGSHSNYNTIVVG------GTHTHKFKNLSL 122
           R+VNV   +  + +HSN N  +VG      G   + F+NLS+
Sbjct: 182 RMVNVKQFADSLFAHSNQNIFIVGKCFFPKGLRNYVFRNLSI 223


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 220 FQKSIAIALHPKESEKEQLQLGLIYRLQNRPKHQFVVPSFLPK 348
           FQK++ IAL   +  +  L+ G I R+  R K  +V     P+
Sbjct: 394 FQKNMIIALRDLDLRQVLLRFGEIERIIVRRKQNYVFSDCFPR 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,022
Number of Sequences: 27780
Number of extensions: 146957
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)