Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F24
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.45 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.45 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   1.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   1.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   1.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   1.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 333 GYHELMFWSILQTVNQPELQLFLFAFFGVQRDSNRFLKY 217
           GY+   +W I  T+  P + + +F F  ++    ++L Y
Sbjct: 484 GYYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 522


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 333 GYHELMFWSILQTVNQPELQLFLFAFFGVQRDSNRFLKY 217
           GY+   +W I  T+  P + + +F F  ++    ++L Y
Sbjct: 537 GYYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 575


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    CD
Sbjct: 99  CLYVPPGIFKSTCKIDIAWFPFDDQHCD 126


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    CD
Sbjct: 99  CLYVPPGIFKSTCKIDITWFPFDDQHCD 126


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    CD
Sbjct: 99  CLYVPPGIFKSTCKIDITWFPFDDQHCD 126


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    CD
Sbjct: 167 CLYVPPGIFKSTCKIDITWFPFDDQHCD 194


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    CD
Sbjct: 167 CLYVPPGIFKSTCKIDITWFPFDDQHCD 194


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    CD
Sbjct: 99  CLYVPPGIFGSTCKIDIAWFPFDDQHCD 126


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C + +  + F    CD
Sbjct: 99  CLYVPPGIFKSTCKMDIAWFPFDDQHCD 126


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C I +  + F    C+
Sbjct: 136 CLYVPPGIFKSTCKIDITWFPFDDQRCE 163


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = -1

Query: 303 LQTVNQPELQLF 268
           L+T+N+PE+++F
Sbjct: 351 LETLNEPEIRVF 362


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 96  CVYPPPQ*YYSCCVILLLSYRFIHLLCD 13
           C+Y PP  + S C + +  + F    CD
Sbjct: 99  CLYVPPGIFKSTCKMDVAWFPFDDQHCD 126


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 2   HEAGSHS 22
           HEAGSHS
Sbjct: 272 HEAGSHS 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,581
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)