Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F23
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 1.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 2.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 26 2.7
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 4.7
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 4.7
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 25 6.1
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 25 6.1
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 24 8.1
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 24 8.1
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 24 8.1
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 22 CEIFW*IKRELRNLFNNTGVVRLTRL 99
CEIFW I EL+N F + V T +
Sbjct: 470 CEIFWLILSELKNFFKSELEVFFTEI 495
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 154 NAKSKRLMKCELGRSRFLRAVS--ISRRP 74
+ K KR CE G+ F+RA S + +RP
Sbjct: 47 SVKGKRYFSCEKGKGIFVRACSSNVMKRP 75
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 261 IPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFREKSSCTV 389
+P S+++ ++KY EH Q + L + SQ + ++S TV
Sbjct: 614 VPKSISLK-MIKYSKEHIQHELLEQLYKSQAFDKLLQESEVTV 655
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 349 WLENPTRRQSSCSCSLMYFTMSDTATDTGILLIAASRLNCS 227
+ +PT +QS S SL+ + T L I ASRL S
Sbjct: 185 YYRSPTYQQSMSSRSLLIMDIPTTMRSNNGLSILASRLKSS 225
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 4.7
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 135 KRFDFAFNIGLSDTAVMDMMVST-----LQQQRAVTEQLRREAAIKRIPVSVAVSDIVKY 299
K+FDF F+ ++D +S + V + E++ K +PV D++K
Sbjct: 371 KQFDFVFDESQQIDFLLDTKLSAENPVDTDKMTDVKVEKSLESSRKSLPVYQYKDDLLKA 430
Query: 300 INEHE 314
INE++
Sbjct: 431 INEYQ 435
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 221 CNRTIKTRSCYQKNSSVSGCI 283
CN+T +C+ +SS GCI
Sbjct: 235 CNKTEFNEACFDASSSRLGCI 255
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 255 KRIPVSVAVSDIVKYINEH 311
K++PVS ++DI ++N H
Sbjct: 42 KKVPVSKVLADITVFLNAH 60
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 42 KARIEKSFQ*YGRREIDTALKKRLRPNSHFIK 137
K + E+ + RR + T +RPNSH+ K
Sbjct: 327 KTQYEQLQKDVSRRAVATTSASTIRPNSHYKK 358
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 165 LSDTAVMDMMVSTLQQQRAVTEQLRR-EAAIKRIPVSVAVSDIVKYINEHEQED 323
L AV + L+++R +++ E I + ++A ++KY +HE D
Sbjct: 440 LHQDAVDTVAAEFLEERRFESDEEEDVEPQISNVEAAMAFEVLIKYFEQHENGD 493
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 24.2 bits (50), Expect = 8.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 105 KRLRPNSHFIKRFDFAFNIG 164
+R S ++K +DF+FN G
Sbjct: 26 RRRDTRSKYVKNYDFSFNFG 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,796
Number of Sequences: 5004
Number of extensions: 28032
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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