Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F23
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67883-2|CAA91806.1| 62|Caenorhabditis elegans Hypothetical pr... 45 3e-05
AF291848-1|AAK55965.1| 62|Caenorhabditis elegans heterotrimeri... 45 3e-05
AF291849-1|AAK55966.1| 62|Caenorhabditis elegans heterotrimeri... 39 0.002
AF106590-1|AAC78236.1| 62|Caenorhabditis elegans G protein, ga... 39 0.002
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 1.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 1.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 1.0
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 2.3
AC006780-3|AAF60649.2| 425|Caenorhabditis elegans Hypothetical ... 27 4.1
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 27 5.4
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 27 5.4
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 27 5.4
AF016430-7|AAL08025.1| 162|Caenorhabditis elegans Hypothetical ... 26 9.4
AF016430-6|AAK95869.1| 274|Caenorhabditis elegans Hypothetical ... 26 9.4
AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine re... 26 9.4
>Z67883-2|CAA91806.1| 62|Caenorhabditis elegans Hypothetical
protein K02A4.2 protein.
Length = 62
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +3
Query: 204 LQQQRAVTEQLRREAAIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFREKSSC 383
++ +A TEQL EA I+R VS +++ + +++ D L+ G + Q NPF+EK SC
Sbjct: 1 MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKKSC 59
Query: 384 TVL 392
+VL
Sbjct: 60 SVL 62
>AF291848-1|AAK55965.1| 62|Caenorhabditis elegans heterotrimeric G
protein gammasubunit 1 protein.
Length = 62
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +3
Query: 204 LQQQRAVTEQLRREAAIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFREKSSC 383
++ +A TEQL EA I+R VS +++ + +++ D L+ G + Q NPF+EK SC
Sbjct: 1 MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKKSC 59
Query: 384 TVL 392
+VL
Sbjct: 60 SVL 62
>AF291849-1|AAK55966.1| 62|Caenorhabditis elegans heterotrimeric G
protein gammasubunit 2 protein.
Length = 62
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 213 QRAVTEQLRREAAIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFREKSSCTVL 392
QR V + LR + I+R P++V+ +++ ++ E LV +KVNP+ EKS C++L
Sbjct: 7 QRTV-DSLRSQLNIERTPITVSAAELRRFTESQEDP---LVNPIDKKVNPWAEKSKCSML 62
>AF106590-1|AAC78236.1| 62|Caenorhabditis elegans G protein, gamma
subunit protein 2 protein.
Length = 62
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 213 QRAVTEQLRREAAIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFREKSSCTVL 392
QR V + LR + I+R P++V+ +++ ++ E LV +KVNP+ EKS C++L
Sbjct: 7 QRTV-DSLRSQLNIERTPITVSAAELRRFTESQEDP---LVNPIDKKVNPWAEKSKCSML 62
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 1.0
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 271 DTGILLIAASRLNCSVTARCCCNVETIMSITAVSDRPMLNAKSKRLM----KCELGRSR- 107
+TG +I N S CNVE + + VSD M N S R + KC R+
Sbjct: 4391 ETGTRIITCEVSNSSSKVNASCNVERVHN--TVSDFVMTNDNSTRFLAVGRKCTRERNNT 4448
Query: 106 FLRAVSISR 80
L+AV ++R
Sbjct: 4449 ILKAVVVAR 4457
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 1.0
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 271 DTGILLIAASRLNCSVTARCCCNVETIMSITAVSDRPMLNAKSKRLM----KCELGRSR- 107
+TG +I N S CNVE + + VSD M N S R + KC R+
Sbjct: 4391 ETGTRIITCEVSNSSSKVNASCNVERVHN--TVSDFVMTNDNSTRFLAVGRKCTRERNNT 4448
Query: 106 FLRAVSISR 80
L+AV ++R
Sbjct: 4449 ILKAVVVAR 4457
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 1.0
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 271 DTGILLIAASRLNCSVTARCCCNVETIMSITAVSDRPMLNAKSKRLM----KCELGRSR- 107
+TG +I N S CNVE + + VSD M N S R + KC R+
Sbjct: 4391 ETGTRIITCEVSNSSSKVNASCNVERVHN--TVSDFVMTNDNSTRFLAVGRKCTRERNNT 4448
Query: 106 FLRAVSISR 80
L+AV ++R
Sbjct: 4449 ILKAVVVAR 4457
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 67 NNTGVVRLTRLSKNGYALIRISLNVLILRST*AY 168
N+ G R L+KN YA I S+N+LI+ S Y
Sbjct: 175 NSIGSKRRVELAKNCYAAIFFSINLLIIISAILY 208
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 170 RHRRYG-HDGFN-ITATASCNRTIKTRSCYQKNSSVSGCI*HRK 295
RHR G D +N + A R IK R+ YQK++ V+G + HR+
Sbjct: 64 RHRTNGLWDEYNKFESVAGVRRRIK-RATYQKSNGVTGRLAHRR 106
>AC006780-3|AAF60649.2| 425|Caenorhabditis elegans Hypothetical
protein Y47D9A.5 protein.
Length = 425
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 249 AIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFREK 374
+I ++ ++ + +V N H DC+L GF ++N + K
Sbjct: 111 SIYQLKNTINIDGVVDQSNPHINHDCILDGFERYRLNIAKRK 152
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 198 STLQQQRAVTEQLRRE-AAIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFRE 371
++L Q A E L + + ++VA +VK+I C+LVG + + V F E
Sbjct: 57 NSLNLQNAANEVLHSIISCFMMVVLAVAAGKLVKFIYTPSLIGCMLVGIAMRNVPQFGE 115
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 198 STLQQQRAVTEQLRRE-AAIKRIPVSVAVSDIVKYINEHEQEDCLLVGFSSQKVNPFRE 371
++L Q A E L + + ++VA +VK+I C+LVG + + V F E
Sbjct: 57 NSLNLQNAANEVLHSIISCFMMVVLAVAAGKLVKFIYTPSLIGCMLVGIAMRNVPQFGE 115
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 313 SCSLMYFTMSDTATDTGIL-LIAASRLNCSVTARCCC 206
SC M S TA T L L+ + +C+ TARC C
Sbjct: 653 SCVEMSSVSSATACPTNNLALLCSGHGHCTTTARCVC 689
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 313 SCSLMYFTMSDTATDTGIL-LIAASRLNCSVTARCCC 206
SC M S TA T L L+ + +C+ TARC C
Sbjct: 653 SCVEMSSVSSATACPTNNLALLCSGHGHCTTTARCVC 689
>AF016430-7|AAL08025.1| 162|Caenorhabditis elegans Hypothetical
protein C05C8.9b protein.
Length = 162
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 107 FFESRVNLTTPVLLKRFLNSRFIYQNIS-QNDY 12
F +N+ +P++ ++ RFIY+N+ Q+D+
Sbjct: 75 FPTENLNIQSPIVSRKRQGKRFIYENVELQSDF 107
>AF016430-6|AAK95869.1| 274|Caenorhabditis elegans Hypothetical
protein C05C8.9a protein.
Length = 274
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 107 FFESRVNLTTPVLLKRFLNSRFIYQNIS-QNDY 12
F +N+ +P++ ++ RFIY+N+ Q+D+
Sbjct: 75 FPTENLNIQSPIVSRKRQGKRFIYENVELQSDF 107
>AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine
receptor, class r protein8 protein.
Length = 428
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -3
Query: 307 SLMYFTMSDTATDTGIL-----LIAASRLNCSVTARCCCNVETIMSITAV 173
S YF SD T + +L L+ AS L+CS ++CC ++ + V
Sbjct: 46 SKYYFPFSDD-TPSDLLGPFRFLVKASLLDCSTKSKCCSVFTCLLGVVMV 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,938
Number of Sequences: 27780
Number of extensions: 161280
Number of successful extensions: 433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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