Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F23
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   4.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   5.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 FAFNIGLSDTAVMDMMVSTLQQQRAVTEQLRREAAIKRIPVS 272
           F F I   D++     +   +      +++++++A+K IPVS
Sbjct: 20  FLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 FAFNIGLSDTAVMDMMVSTLQQQRAVTEQLRREAAIKRIPVS 272
           F F I   D++     +   +      +++++++A+K IPVS
Sbjct: 20  FLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 FAFNIGLSDTAVMDMMVSTLQQQRAVTEQLRREAAIKRIPVS 272
           F F I   D++     +   +      +++++++A+K IPVS
Sbjct: 20  FLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 215 ASCNRTIKTRSCYQKNSSVSGCI 283
           ASC  + +  +C   NS  +GC+
Sbjct: 161 ASCCNSPENNTCSISNSYTNGCV 183


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 328 FLSGFPAKKLTLSVKRALALYCKLLCVIM 414
           FL GFP K    +V +A+ +   L  +I+
Sbjct: 25  FLQGFPGKNSPYTVTQAILIALVLGSIIV 53


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 400 VIYNTVQELFSRKGLTFWLENP-TRR 326
           V++NT+  ++S  GL  +  NP T+R
Sbjct: 11  VLFNTLHIIYSVAGLKIFEANPDTKR 36


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 70  NTGVVRLTRLSKNGYA 117
           NTGV   T++++NG A
Sbjct: 307 NTGVDYFTQINRNGIA 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,998
Number of Sequences: 438
Number of extensions: 2141
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)