Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F19
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0211 + 15899017-15901392 29 2.3
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 27 7.1
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 27 7.1
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 27 7.1
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 27 7.1
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 27 7.1
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 27 7.1
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 27 7.1
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 27 7.1
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 27 7.1
03_02_0376 - 7883631-7883858,7883941-7884069,7884172-7884390,788... 27 9.4
>10_08_0211 + 15899017-15901392
Length = 791
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 166 KPICLEVFGKFAQVCAKFSDLAPTSDGLRGCLELEPKLLGEGQLDF 303
K +CL F + + +F DL+ SD + L K++G+G DF
Sbjct: 238 KDMCLS-FALYRLLRCRFDDLSLPSDSVVNTRRLISKIIGKGNADF 282
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 683 CVCDFDMRFTFVLAGWPGSVH 703
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 484 CVCDFDMRFTFVLAGWPGSVH 504
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 724 CVCDFDMRFTFVLAGWPGSVH 744
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 694 CVCDFDMRFTFVLAGWPGSVH 714
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 724 CVCDFDMRFTFVLAGWPGSVH 744
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 696 CVCDFDMRFTFVLAGWPGSVH 716
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 676 CVCDFDMRFTFVLAGWPGSVH 696
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 685 CVCDFDMRFTFVLAGWPGSVH 705
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 10 CVCCVEFNITFVDLGGPGCVH 72
CVC + TFV G PG VH
Sbjct: 678 CVCDFDMRFTFVLAGWPGSVH 698
>03_02_0376 -
7883631-7883858,7883941-7884069,7884172-7884390,
7884505-7884801,7886534-7886839
Length = 392
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 181 EVFGKFAQVCAKFSDLAPTSDGLRGCLELEPKLLGEG 291
E FG FA+ +KF +L DG EL+P + G G
Sbjct: 48 EAFGMFAE--SKFRELDADGDGRLSVRELQPAVEGIG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,294
Number of Sequences: 37544
Number of extensions: 241873
Number of successful extensions: 581
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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