Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F19
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    44   7e-05
AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical ...    31   0.68 
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
 Frame = +1

Query: 10  CVCCVEFNITFVDLGGPGCVHMKYLSPEEGFSVKVSYGKSLIHNSKINGTNPKPIC--LE 183
           C CC+E ++   +     CV+  Y     G  + +        + +I+  NP P+C  L 
Sbjct: 145 CACCLEISVP--EFRHSVCVNATYNPVSIGLDLSIGVDGHYF-SEEISLRNPPPVCFSLP 201

Query: 184 VFGK--FAQVCAKFS--DLAPTSDGLRGCLELEPKLLGEGQLDFPIGCFK 321
           + G    A VC  F+  DL      L GC++ E +L+    L F +GCF+
Sbjct: 202 IPGAEHIAGVCVAFTKLDLDKKEKILSGCMDFEVELIHLRVLTFKLGCFR 251


>AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical
           protein T03D3.5 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 263 NWNLNSLGKDNSTSRSVVSNQHLEEWKWKIRPLNQ 367
           N N+ +  +D S   S +S Q   +WK+++ P+N+
Sbjct: 251 NNNIETKSEDPSPENSKISTQMFTDWKYQLLPINE 285


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 131 LYITQKSTGQIRNQYVWKYSVNLLKCVQNSATWLQHPMAFVG 256
           LY+ +K  G     Y       L  C+ NS  WL  P A  G
Sbjct: 186 LYLFEKRNGDCSENYTTALQYQLYVCLFNSVVWLL-PSAIAG 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,391,837
Number of Sequences: 27780
Number of extensions: 220097
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)