Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F16
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    29   0.65 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.1  

>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 323 NAWNENGSGCDCENGRASSWSRSVSGTATDPG---CGCASTNASATSNGT 183
           +++N NG+  +C +   +SW+ S +     P    C  A  N   ++NGT
Sbjct: 339 HSYNPNGTIPECPSRNKTSWAVSANAFPVTPNTTICSNAVKNLKCSANGT 388


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 65  EEALDSLDGRMLDGRELRVQMA 130
           EEA++SL+G  +DGR + V  A
Sbjct: 162 EEAMNSLNGTEIDGRPIAVDWA 183


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 158 CRVMRVCHNAPSVLGAPYRLTSAHQVSPGLLQH 60
           CR+++ C      L AP+  +SA+     LL H
Sbjct: 549 CRIIQDCTELSISLAAPFTASSAYLAGTVLLYH 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,970
Number of Sequences: 5004
Number of extensions: 30208
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)