Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F16
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 34 0.084
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.084
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 33 0.15
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 31 0.78
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 1.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 1.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 3.2
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 3.2
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 28 4.2
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 28 4.2
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z73972-10|CAA98263.2| 388|Caenorhabditis elegans Hypothetical p... 28 5.5
Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 28 5.5
Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical p... 28 5.5
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 5.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 5.5
AL021474-8|CAA16310.2| 388|Caenorhabditis elegans Hypothetical ... 28 5.5
AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-relat... 28 5.5
AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-relat... 28 5.5
AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin prote... 28 5.5
AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin prote... 28 5.5
AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin prote... 28 5.5
AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin prote... 28 5.5
AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin prote... 28 5.5
Z83238-5|CAB05796.1| 304|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.9 bits (74), Expect = 0.084
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E ALD DG+++DGRELRV +A
Sbjct: 74 EHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.9 bits (74), Expect = 0.084
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E ALD DG+++DGRELRV +A
Sbjct: 74 EHALDRTDGKLVDGRELRVTLA 95
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -3
Query: 296 CDCENGRASSWSRSVSGTA--TDP---GCGCASTNASATSNGTCVC 174
C C+ G + S GTA T P G C S+N+SAT+ +C+C
Sbjct: 106 CACQAGYTGADCTSELGTACATSPCRSGATCVSSNSSATTEYSCIC 151
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 251 SGTATDPGCGCASTNASATSNGTCVCGRIC 162
+G+A PGC C S N SNG CV R C
Sbjct: 887 AGSACTPGCFCRS-NYKLDSNGDCVHKRKC 915
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -3
Query: 230 GCGCASTNASATSNGTCVCGRICFCRVMRVC 138
GCGC G C C C C R C
Sbjct: 69 GCGCCGCGGGGGGCGCCCCRPRCCCCCRRCC 99
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -3
Query: 230 GCGCASTNASATSNGTCVCGRICFCRVMRVC 138
GCGC G C C C C R C
Sbjct: 70 GCGCCGCGGGGGGCGCCCCRPRCCCCCRRCC 100
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -3
Query: 230 GCGCASTNASATSNGTCVCGRICFCRVMRVC 138
GCGC G C C C C R C
Sbjct: 71 GCGCCGCGGGGGGCGCCCCRPRCCCCCRRCC 101
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 245 TATDPGCGCASTNASATSNGTCVCGRICFCRVMRVCHNAPSVLG 114
+ T GCG + S TC G IC C + C N VLG
Sbjct: 1017 SCTGDGCGGVQVSYYCGSGYTCTTGNIC-CPI-NSCPNGGEVLG 1058
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 305 GSGCDCENGRASSWSRSVSGTATDPGCGCASTNASAT-SNGTCVCGRICFCRVMRVC 138
G G +C+NG+ S S + C T S NG+C G C + C
Sbjct: 1288 GIGLECQNGKCCSPSSNKPAGLLQSKCPSGDTAVSGCFPNGSCGTGYECVSSLNLCC 1344
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 245 TATDPGCGCASTNASATSNGTCVCGRICFCRVMRVCHNAPSVLG 114
+ T GCG + S TC G IC C + C N VLG
Sbjct: 359 SCTGDGCGGVQVSYYCGSGYTCTTGNIC-CPI-NSCPNGGEVLG 400
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 305 GSGCDCENGRASSWSRSVSGTATDPGCGCASTNASAT-SNGTCVCGRICFCRVMRVC 138
G G +C+NG+ S S + C T S NG+C G C + C
Sbjct: 630 GIGLECQNGKCCSPSSNKPAGLLQSKCPSGDTAVSGCFPNGSCGTGYECVSSLNLCC 686
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 245 TATDPGCGCASTNASATSNGTCVCGRICFCRVMRVCHNAPSVLG 114
+ T GCG + S TC G IC C + C N VLG
Sbjct: 359 SCTGDGCGGVQVSYYCGSGYTCTTGNIC-CPI-NSCPNGGEVLG 400
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Frame = -3
Query: 311 ENGSGCDCENGR---ASSWSRSVSGTATDPG---------CGCASTNASATSNGTCVC 174
+NG+ CD NG A WS A PG C CA S+G C+C
Sbjct: 906 QNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGMHCDPSDGECIC 963
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Frame = -3
Query: 311 ENGSGCDCENGR---ASSWSRSVSGTATDPG---------CGCASTNASATSNGTCVC 174
+NG+ CD NG A WS A PG C CA S+G C+C
Sbjct: 906 QNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGMHCDPSDGECIC 963
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 314 NENGSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSNG 186
N NG G NG A + + + +G G G + N + NG
Sbjct: 836 NGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNGNGAGAGNG 878
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 314 NENGSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSNG 186
N NG G NG A + + + +G G G + N + NG
Sbjct: 813 NGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNGNGAGAGNG 855
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 314 NENGSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSNG 186
N NG G NG A + + + +G G G + N + NG
Sbjct: 466 NGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNGNGAGAGNG 508
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 233 PGCGCASTNASATSNGTCVCGRICF 159
PGC C N SNG CV R CF
Sbjct: 649 PGCVCRP-NYKLDSNGDCVHNRHCF 672
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 233 PGCGCASTNASATSNGTCVCGRICF 159
PGC C N SNG CV R CF
Sbjct: 714 PGCVCRP-NYKLDSNGDCVHNRHCF 737
>Z73972-10|CAA98263.2| 388|Caenorhabditis elegans Hypothetical
protein F15H10.4 protein.
Length = 388
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 498 PLHRIIYLYFVNCNFLLC 551
PL R IY++ V CN+++C
Sbjct: 80 PLCRSIYMHVVGCNYVIC 97
>Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical
protein C35A5.10 protein.
Length = 286
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 242 ATDPGCGCASTNASATSNGTCVCGRICFCR 153
AT+P G N S +CV G +C CR
Sbjct: 191 ATEPSGGVCRNNGVCPSGHSCVAGNVC-CR 219
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 492 KFPLHRIIYLYFVNCNFLLCV*FLFYSHI 578
+FPL ++L F++C F L + FLF+ H+
Sbjct: 238 RFPL---VFLLFLSCMFSLSLSFLFFYHL 263
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 492 KFPLHRIIYLYFVNCNFLLCV*FLFYSHI 578
+FPL ++L F++C F L + FLF+ H+
Sbjct: 236 RFPL---VFLLFLSCMFSLSLSFLFFYHL 261
>Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 492 KFPLHRIIYLYFVNCNFLLCV*FLFYSHI 578
+FPL ++L F++C F L + FLF+ H+
Sbjct: 238 RFPL---VFLLFLSCMFSLSLSFLFFYHL 263
>Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 492 KFPLHRIIYLYFVNCNFLLCV*FLFYSHI 578
+FPL ++L F++C F L + FLF+ H+
Sbjct: 236 RFPL---VFLLFLSCMFSLSLSFLFFYHL 261
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A +++DGR++ GR++RV+ A
Sbjct: 164 ESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A +++DGR++ GR++RV+ A
Sbjct: 164 ESAKEAIDGRIIHGRQVRVRFA 185
>AL021474-8|CAA16310.2| 388|Caenorhabditis elegans Hypothetical
protein F15H10.4 protein.
Length = 388
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 498 PLHRIIYLYFVNCNFLLC 551
PL R IY++ V CN+++C
Sbjct: 80 PLCRSIYMHVVGCNYVIC 97
>AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-related
protein protein.
Length = 679
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-related
protein protein.
Length = 732
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin protein
1, isoform e protein.
Length = 718
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin protein
1, isoform b protein.
Length = 732
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin protein
1, isoform c protein.
Length = 702
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin protein
1, isoform d protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin protein
1, isoform a protein.
Length = 679
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>Z83238-5|CAB05796.1| 304|Caenorhabditis elegans Hypothetical
protein T08G3.6 protein.
Length = 304
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/40 (22%), Positives = 18/40 (45%)
Frame = -3
Query: 284 NGRASSWSRSVSGTATDPGCGCASTNASATSNGTCVCGRI 165
+G +WSR+ + GC C + ++ C C ++
Sbjct: 154 DGEKKAWSRTRRCLTEEAGCPCTDPGTTIETSTACPCRKL 193
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 272 SSWSRSVSGTATDPGCG-CASTNASATSNGTCVCGRICFCRVMRVC 138
SS R++ + T G C ST++ +++G+ G +C R VC
Sbjct: 366 SSGERNMECSPTGSGANSCPSTHSCESTSGSTTFGGVCCPRPQYVC 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,063,979
Number of Sequences: 27780
Number of extensions: 185086
Number of successful extensions: 618
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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