Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F16
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 403 LYNSSVH*SIYRHNYNGHS 459
           L N+++H + Y++NYN ++
Sbjct: 84  LSNNTIHNNNYKYNYNNNN 102


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 403 LYNSSVH*SIYRHNYNGHS 459
           L N+++H + Y++NYN ++
Sbjct: 84  LSNNTIHNNNYKYNYNNNN 102


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 403 LYNSSVH*SIYRHNYNGHS 459
           L N+++H + Y++NYN ++
Sbjct: 85  LSNNTIHNNNYKYNYNNNN 103


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 403 LYNSSVH*SIYRHNYNGHS 459
           L N+++H + Y++NYN ++
Sbjct: 85  LSNNTIHNNNYKYNYNNNN 103


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 403 LYNSSVH*SIYRHNYNGHS 459
           L N+++H + Y++NYN ++
Sbjct: 85  LSNNTIHNNNYKYNYNNNN 103


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 403 LYNSSVH*SIYRHNYNGHS 459
           L N+++H + Y++NYN ++
Sbjct: 85  LSNNTIHNNNYKYNYNNNN 103


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 525 NIDR*SYVKGT*NVICYIEYFVTMSIIVMSVDALV 421
           N DR  +++G  NV+ +  YF   S    ++++++
Sbjct: 11  NFDRFFFIEGMTNVLDFDYYFYDYSNRTQALESII 45


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 395 LRYYITHQFTKASTDITIMDIVTK 466
           L+YY+T   +K S     +D VT+
Sbjct: 263 LKYYVTPNLSKLSDPEVWIDAVTQ 286


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 395 LRYYITHQFTKASTDITIMDIVTK 466
           L+YY+T   +K S     +D VT+
Sbjct: 316 LKYYVTPNLSKLSDPEVWIDAVTQ 339


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = -3

Query: 287 ENGRASSWSRSVSGTATDPGCGCASTNASATSNGTCVC----GRICFCRV 150
           EN   ++ S +V     +  CG  + N  +TSN   V     GR  FC V
Sbjct: 91  ENKNCNAGSLTVKKNFANKYCGNITLNIESTSNKMTVILTPPGRF-FCEV 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,968
Number of Sequences: 438
Number of extensions: 2434
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)