Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F14
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   4.1  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   5.4  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   9.5  

>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 142 TLTVSLSFQQSKQLNKYNTD*TIV 71
           T+  S S++QSK LNKY  + T +
Sbjct: 249 TMKESKSYEQSKALNKYTDNDTYI 272


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 389 NGGQIAYGERKVAGNDW 439
           NGG   YG  ++ G DW
Sbjct: 451 NGGGSQYGRLRIVGEDW 467


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 HIS*TTALYGRLDHLYCPI 252
           HI+    +YG +DH++ PI
Sbjct: 114 HIAEIFGIYGLIDHIFMPI 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,630
Number of Sequences: 5004
Number of extensions: 34420
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)