Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F13
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...   125   5e-30
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   0.98 
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   3.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   4.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.2  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   6.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.1  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score =  125 bits (302), Expect = 5e-30
 Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 5/171 (2%)
 Frame = +3

Query: 138 RIFTNLYGRHEWRLKGALSRGDWYLTKEILLKGTDWIVSELKTSGLRGRGGAGFPTGMKW 317
           R+F NL  +   R+  AL+ G++    EIL      I+  ++ S LRGRG  GFPTG K 
Sbjct: 33  RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92

Query: 318 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGKAMGAQAA 482
             + K +    GR +   ++VNA E + G+ KDR ++RH+PHK++EG +IA +A+ A A 
Sbjct: 93  LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152

Query: 483 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNACGSRYDFDVXVHRGAGAYI 635
           Y++IR ++Y E   +Q  I +AY   L+GKN  G+    ++ +H GAG+YI
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYI 203


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 439 STSLWGSWRMISLSLHVPGSPSSALTTKYFGRPSDGLFMKDHFIPV 302
           S   W +      SL     P    TT++F RPS G   K+ F+ V
Sbjct: 253 SDDSWKAPESWGTSLPTEAIPKQVFTTRFFARPSLGNRKKEFFLRV 298


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 443 AFYKLMGIMAHDLSIFTCPRFTLIS---INYQVFWA 345
           +F K +   + DLS  T P F L S   I Y  +WA
Sbjct: 29  SFLKSIATFSGDLSSLTAPSFILSSTSLIEYSAYWA 64


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 248 CQ*IKDIRSSWSRRCW 295
           CQ I+D++  WS+RCW
Sbjct: 167 CQLIQDMKG-WSKRCW 181


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 463 ALPAIRQPSTSLWGSWR 413
           A P IR+    LWGSW+
Sbjct: 178 AQPTIRKDGLRLWGSWK 194


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 41  YWSIGNQQQCTGALPTDTGSSQNEVWTSGRLRQDFHKFIRSS*VAIERCSKPWRLV 208
           +W I   Q+  G  P  +GS    + +     +DF K + ++  +I+     W +V
Sbjct: 99  FWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIV 154


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 295 PAPPRPRRPDVFNSLTIQSVP 233
           PAP  P +P++F S  +QS P
Sbjct: 255 PAPLEPDKPELFISYIVQSHP 275


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +3

Query: 21   TKTHLGVIGPLATSSNVPVRYQ---QTQAPAKTK 113
            TKT LG+IG + TSS+  +++    QT+  +K K
Sbjct: 1300 TKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNK 1333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,689
Number of Sequences: 5004
Number of extensions: 64093
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)