Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F13
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 298 3e-81
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 33 0.14
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 30 1.3
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 30 1.8
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.1
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 29 3.1
01_06_0956 - 33343503-33344086,33344225-33344384 29 3.1
01_07_0345 + 42877363-42878367 28 5.4
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 27 9.4
06_03_0365 + 19918003-19918401 27 9.4
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 27 9.4
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 298 bits (731), Expect = 3e-81
Identities = 138/194 (71%), Positives = 155/194 (79%)
Frame = +3
Query: 54 ATSSNVPVRYQQTQAPAKTKFGPLADCDRIFTNLYGRHEWRLKGALSRGDWYLTKEILLK 233
AT+S+ P P KT FG L D DRIFTNLYG+H+ LKGA+ RGDW+ TK+++LK
Sbjct: 63 ATTSSTPQPPPPPPPPEKTHFGDLKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLK 122
Query: 234 GTDWIVSELKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIM 413
G DWIV+E+K SGLRGRGGAGFP+G+KWSFM K SDGRP YLVVNADE EPGTCKDREIM
Sbjct: 123 GADWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIM 182
Query: 414 RHDPHKLVEGCLIAGKAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNACGSRY 593
RHDPHKL+EGCLIAG M A AAYIYIRGE+ NE NL A EAY AGL+GKNACGS Y
Sbjct: 183 RHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGY 242
Query: 594 DFDVXVHRGAGAYI 635
DFDV +H GAGAYI
Sbjct: 243 DFDVHIHFGAGAYI 256
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 72 PVR-YQQTQAPAKTKFGPLADCDRIFTNLYGRHEWRLKGALSRGDW 206
P+R Y+ T+A F P A R++ +L+ EW +G R DW
Sbjct: 168 PIREYRNTEATTGVAF-PRAQAMRVYASLWDAEEWATQGGRVRTDW 212
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 289 PPRPRRPDVFNSLTIQSVPFSRISL 215
PP P+ P VF +TI S+P RI +
Sbjct: 31 PPNPKNPVVFFDVTIGSIPAGRIKM 55
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 69 VPVR-YQQTQAPAKTKFGPLADCDRIFTNLYGRHEWRLKGALSRGDW 206
VP+R Y+ + P F P+ +F++++ +W +G L + DW
Sbjct: 178 VPIREYRNSDKP--NTFFPIMKPMYVFSSIWNADDWATRGGLEKTDW 222
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 198 HGLEHLSIATHDDRINL*KSCRSLPEVQTSFWLEPVSVGNAPVHCC 61
H L L+IATH+D + LP++ LEP S NA C
Sbjct: 551 HSLIQLAIATHNDELLYFVQDDILPKIVQCLTLEPKSDNNALYLLC 596
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +3
Query: 180 KGALSRGDWYLTKEILLKGTDWIVSELKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYL 359
KG + D + KE+ L+G D + + S L GRG P G S ++K +DG +
Sbjct: 220 KGMGAHVDLFYRKELPLRGFDDEMRTVVASNLEGRGIRLHP-GTNLSELSKTADG----I 274
Query: 360 VVNADEGE 383
V D+GE
Sbjct: 275 KVVTDKGE 282
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 478 ACAPIALPAIRQPSTSLWGSWRMISLSLHVPGSPSSALTTKYFGRPSDGLFMKDHFIPVG 299
A AP+ PA +T S S H+P P+ A+ +D F F P+
Sbjct: 153 AQAPVWSPAPAPAATQRRHSGHKKHRSRHLPPKPAPAMAPTVQSVEAD--FPAAAFAPMS 210
Query: 298 KPAPPRPRRPD 266
P PP P D
Sbjct: 211 SPPPPPPMSSD 221
>01_07_0345 + 42877363-42878367
Length = 334
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 246 IVSELKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLV 362
+ +++ G G GG+G PT + WS S R + ++
Sbjct: 236 LYTQMDDGGFNGGGGSGSPTMIGWSSRGSRSSQRQRSII 274
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 307 PVGKPAPPRPRRPDVFNSL-TIQSVPFSRISLVKYQSPRL 191
PV +PAPP P +P V + + +SR+ L K++S ++
Sbjct: 68 PVPEPAPPEPEKPAVSTDVQNAKPKVYSRVRL-KFKSAKV 106
>06_03_0365 + 19918003-19918401
Length = 132
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 261 KTSGLRGRGGAGFPTGMKWSF 323
+T+G RGRGG G TG W+F
Sbjct: 73 RTAGRRGRGGGGGGTG-AWAF 92
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 307 PVGKPAPPRPRRPDVFNSL-TIQSVPFSRISLVKYQSPRL 191
PV +PAPP P +P V + + +SR+ L K++S ++
Sbjct: 68 PVPEPAPPEPEKPAVSTDVQNAKPKVYSRVRL-KFKSAKV 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,506,405
Number of Sequences: 37544
Number of extensions: 452837
Number of successful extensions: 1281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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