Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F13
(635 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 25 0.47
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 2.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 3.3
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 7.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 7.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 7.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 7.6
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 7.6
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 25.4 bits (53), Expect = 0.47
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 523 TFKWLLLRHTKQVS*VRMHAGPVMISMCXYIVVLVR 630
+ KW L+ H ++S + P+ I + YI++ ++
Sbjct: 212 SMKWTLIEHAFEISTMLFFVLPMTIIIVLYILIAIK 247
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 23.0 bits (47), Expect = 2.5
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -2
Query: 277 RRPDVFNSLTIQ----SVPFSRISLVKYQSPRLRAPFNRHS*RPYKFVKILSQSARGPNF 110
RRP NS Q + ++ V + PR+ R+ K ++ +++A+
Sbjct: 402 RRPSRRNSCESQMMGDEMSLRELTQVTEEKPRVMKMGKRNIKAQVKRFRMETKAAKTLGI 461
Query: 109 VLAGACVCW*RTGTLLLV 56
++ G +CW T+ LV
Sbjct: 462 IVGGFILCWLPFFTMYLV 479
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 RPKYLVVN-ADEGEPGTCKDREIMRHD 422
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 RPKYLVVN-ADEGEPGTCKDREIMRHD 422
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 RPKYLVVN-ADEGEPGTCKDREIMRHD 422
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 RPKYLVVN-ADEGEPGTCKDREIMRHD 422
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 RPKYLVVN-ADEGEPGTCKDREIMRHD 422
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 472 APIALPAIRQPSTSLWGSWR 413
APIA+ A+ S S+ SWR
Sbjct: 1182 APIAIKALVMSSESILVSWR 1201
Score = 22.2 bits (45), Expect = 4.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 579 CGSRYDFDVXVHRGAG 626
CGSRY V + G G
Sbjct: 1429 CGSRYQIYVTAYNGIG 1444
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 370 ALTTKYFGRPSDGLFMKDHFIPVGKP 293
A++T G D+F+P+G+P
Sbjct: 403 AVSTSILGDKKTAEENTDYFMPIGRP 428
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 119 SKLRFGWSLCLLV 81
S RF W LC+L+
Sbjct: 85 SSFRFYWDLCMLL 97
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 119 SKLRFGWSLCLLV 81
S RF W LC+L+
Sbjct: 85 SSFRFYWDLCMLL 97
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 119 SKLRFGWSLCLLV 81
S RF W LC+L+
Sbjct: 85 SSFRFYWDLCMLL 97
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.4 bits (43), Expect = 7.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2
Query: 448 RQPSTSLWGSW 416
++ ST+LWG W
Sbjct: 481 QRTSTNLWGEW 491
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,712
Number of Sequences: 438
Number of extensions: 4984
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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