Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F12
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           28   2.5  
03_06_0037 + 31222963-31223886,31225172-31225786                       27   4.3  
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239           27   5.7  
03_05_0718 - 27100882-27100929,27101197-27101303,27101446-271015...    27   5.7  
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    26   7.6  

>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 135 PVSLHIHSPPLVQPCKLPPCIIPNTIHAFS 46
           PV      PP+ Q C   PC  P++   FS
Sbjct: 50  PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79


>03_06_0037 + 31222963-31223886,31225172-31225786
          Length = 512

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 265 IHHSLAGVGVNGYCRGGPSLRWFDITG 345
           +   L  +G    C   P+LRWFD+ G
Sbjct: 222 VEEILERIGTGNLCDYLPALRWFDVFG 248


>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
          Length = 569

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 144 RIAPVSLHIHSPPLVQPCKLPP 79
           R++P+ L   +PPL  P  LPP
Sbjct: 106 RVSPIDLDDSAPPLPLPLPLPP 127


>03_05_0718 -
           27100882-27100929,27101197-27101303,27101446-27101593,
           27102195-27102328,27102608-27102929
          Length = 252

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 307 GNNR*HQRQPRNGVYFIILPRACSKVLAASLSSPGSNFTLSLFWPDA 167
           G +R  +R+  +GV    +  A     A+S SSPG      + WP A
Sbjct: 61  GLSRRRRRRDLSGVVVAEVSAAAGVTPASSSSSPGGISVSDVLWPSA 107


>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 47  ENACIVFGIMHGGSLQGCTRGGE 115
           ++ C+V+  M GG+L+G  RG E
Sbjct: 675 KHRCLVYEYMDGGTLEGRLRGRE 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,486,409
Number of Sequences: 37544
Number of extensions: 175479
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)