Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F10
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   2.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   2.7  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   4.7  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.3  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 287 DNKSRHSMSSGPKPGNESETDSMAEYGEGETAGMTEDGSFIGQYG 421
           +N S  +  S    GN   +++   YG   T G     +  G YG
Sbjct: 51  NNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYG 95


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 266 HEYAHPLDNKSRHSMSSGP 322
           H Y HP     ++S+SSGP
Sbjct: 323 HSYVHPGPQSHKYSLSSGP 341


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +2

Query: 299 RHSMSSGPKPGNESETDSMAEYGEGETAGMTEDGSFIGQYGRKRRPPASTQPDSASQAFA 478
           +HS+ S P P N +  DS+    +      +E  +     G + +  +S+   + S  F+
Sbjct: 273 KHSLPSSPTPFNSNSGDSLLSRIKNSNQSSSERPT--ANNGAQEQNQSSSSAGNTSNDFS 330

Query: 479 TL 484
           TL
Sbjct: 331 TL 332


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 392 EDGSFIGQYGRKRRPPASTQPDS 460
           EDG   G+  RK+RPP S +  S
Sbjct: 23  EDGRQKGESSRKKRPPLSRKNPS 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,640
Number of Sequences: 5004
Number of extensions: 15906
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)