Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F10
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1171 - 11070159-11070362,11070554-11070747,11072346-11072541     28   4.7  
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    27   6.3  
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274...    27   8.3  
06_01_0892 - 6827510-6827590,6829348-6830412                           27   8.3  
05_03_0176 + 9240573-9241043                                           27   8.3  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    27   8.3  
01_06_1792 - 39912714-39913559                                         27   8.3  

>07_01_1171 - 11070159-11070362,11070554-11070747,11072346-11072541
          Length = 197

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 296 SRHSMSSGPKPGNESETDSMAEYGEGETAGMTEDGSFIGQYGRKRRPPASTQP 454
           S   +SS P+   E E   ++E       G +ED      Y  ++RPPA   P
Sbjct: 67  STFKLSSKPREPEEEEIQ-LSEISIEFEDGHSEDNEITSNYSCQKRPPAPGSP 118


>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +2

Query: 191 NRGGKYDVHDRELAHGRRDYPDGGFHEYAHPLDNKSR-HSMSSGPKPGNESETDSMAEYG 367
           NR    ++  R    GR  Y DG     +     +SR HS S  P P      D   +Y 
Sbjct: 140 NRKTPQEMRMRTRTSGR--YMDGSHRRRSVSRSPRSRYHSYSPSPSPARRDYRDHRDDYS 197

Query: 368 EGET 379
            GE+
Sbjct: 198 PGES 201


>07_03_0363 +
           17225472-17226778,17226910-17226917,17227313-17227488,
           17227822-17227882,17227955-17228053,17228155-17228249,
           17228411-17228482,17228668-17228735,17228934-17229390,
           17229486-17229596
          Length = 817

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 311 SSGPKPGNESETDSMAEYGEGETAGMTED 397
           S GP P +E   D+    GE +T   TED
Sbjct: 209 SKGPVPADERSKDAHESTGENKTEPKTED 237


>06_01_0892 - 6827510-6827590,6829348-6830412
          Length = 381

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = +2

Query: 248 YPDGGFHEYAHPLDNKSRHSMSSG----PKPGNESETDSMAEYGEGETAGMTEDGSFIGQ 415
           Y  G  + Y      +S  +  SG    PKP ++ ET     YG GE       G     
Sbjct: 280 YGGGSGYGYGKKAQEESEGTYGSGGYPKPKPYSQEETQGSYGYGYGEKPAYESGGYNKPS 339

Query: 416 YG 421
           YG
Sbjct: 340 YG 341


>05_03_0176 + 9240573-9241043
          Length = 156

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 326 PGNESETDSMAEYGEGETAGMTEDGSFIGQYGRKRRPPASTQPDSASQA 472
           PG E+E D   E  E    G+  D  F G +GR    P    P+   QA
Sbjct: 106 PGFEAEPDEPEEEIEDPFTGLPPDFDFFG-FGRGYGYPPPPPPEDPPQA 153


>01_07_0306 +
           42638683-42638990,42639074-42639314,42639935-42640236,
           42640431-42640607,42640853-42641617,42641697-42641791,
           42641889-42641951,42642047-42642135,42642229-42642324,
           42642457-42643104,42643596-42643628,42643838-42643912,
           42644442-42644603,42644604-42644674,42644758-42644815,
           42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 248 YPD-GGFHEYAHPLDNKSRHSMSSGPKPGNESETDSM 355
           YP+ GGFHE+   +  + ++   S P P  E + D +
Sbjct: 873 YPENGGFHEFVPHISQQYQNCAKSTPLPPYEYQYDQL 909


>01_06_1792 - 39912714-39913559
          Length = 281

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +2

Query: 272 YAHPLDNKSRHSMSSGPKPGNESETDSMAEYGEGETAGMTEDGSFIGQYG 421
           Y H        S S  P P  ESE D     G G  +G    G   G +G
Sbjct: 213 YHHTPPGHGSSSSSYSPSPKYESEGDRRRSGGAGSGSGSNSGGGGGGFFG 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,832,829
Number of Sequences: 37544
Number of extensions: 135004
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)