Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F09
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 79 2e-15
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 79 2e-15
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 79 2e-15
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 30 1.4
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 30 1.4
U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 7.6
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 215 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 394
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 395 YAILGFALSE 424
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 215 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 394
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 395 YAILGFALSE 424
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 215 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 394
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 395 YAILGFALSE 424
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 175 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 50
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 175 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 50
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical
protein R57.2 protein.
Length = 216
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = -1
Query: 175 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHRE 35
C H C + V + R D C I+H + + N+++R+
Sbjct: 113 CHHMCVYETDQSVTRNMLTNMRKDSQCRIKHLSSILYCASQNRDNRK 159
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 184 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGGDR-PLECS 8
LC + CC WS + C C G QS + C+ + D+ H +G DR EC+
Sbjct: 698 LCEGQSCCNWS-EWCHWSMCDKECGGGQSIRTR-TCLNSAGSPDSSCHCDGPDREEKECN 755
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 181 CVCRHCCEWSHKSCV 137
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 95
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 95
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 244 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 95
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,099
Number of Sequences: 27780
Number of extensions: 263594
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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