Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F08
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.8  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   3.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   3.7  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 323  APAAAPPILGAQGKCPVPPPS 385
            AP+ APP+    G  PVP PS
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPS 1098


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 578  FVLKKSVDIKQIINGLICK--NKVTVFIFILWTQKHNGPNERKKAKRNLKLYPPFYFRFI 405
            F++ KSV + Q  NG + K  + VT FI  L     + P E+KK+  ++ +    +F  +
Sbjct: 1813 FIIYKSVTMLQ--NGEVLKSGDYVTEFIPALLDMHVHIPEEKKKSFLSMSIPIAAHFSIL 1870

Query: 404  NNSAHSRREGGQ 369
               A +R+  G+
Sbjct: 1871 VEHADARKRIGE 1882


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 338 VPRRVHGCKN*YSQFYQEKYSLKIT-RNRCLVDSYIM 231
           +PR    C N Y++F++   S  +T    CL++S+ M
Sbjct: 327 LPRNTEACPNLYTRFFKLVQSPAVTYLMACLLESHFM 363


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -1

Query: 430 IPHFTSDLLI-TAPTLGGRGDRAFALGA----KNWGCRGGCTVVKIDIVN 296
           + H +S+LLI T P +GG+      +G        GC   C V  +DI++
Sbjct: 709 LEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQIGCPVPCEVADLDIID 758


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 288 LVKLTISIFTTVHPPRHPQFLAPRANALSPLPPRVG 395
           LV L   I   +  P+HPQ+L        PLP  VG
Sbjct: 272 LVLLDFLIRHGIITPQHPQYLQTLERIHRPLPVPVG 307


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 323 APAAAPPILGAQGKCPVPPPS 385
           AP +  P + +  K P+PPPS
Sbjct: 276 APVSMNPAINSTSKPPLPPPS 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,205
Number of Sequences: 5004
Number of extensions: 49393
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)