Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F08
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    32   0.41 
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    28   5.0  
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    28   5.0  
11_04_0451 - 17863381-17864808                                         28   6.7  
04_03_0865 + 20402711-20404057                                         28   6.7  
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    27   8.8  
03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045     27   8.8  
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511...    27   8.8  

>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 327 PPRHPQF-LAPRANALSPLPPRVGAVINKSEVKW 425
           PPRHP+  LAP AN   P PP    +++++ + W
Sbjct: 205 PPRHPRRRLAPHANRRRPAPPPASPILHRA-LSW 237


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 326 PAAAPPILGAQGKCPVPPPS*SG 394
           P  APP+  AQG  P PPP  +G
Sbjct: 258 PRDAPPMHHAQGNVPPPPPPNAG 280


>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 327 PPRHPQFLAPRANALSPLPPRVGAVI 404
           PP  P  L P A A+ PLPP+  AV+
Sbjct: 28  PPPPPPPLPPAAAAVEPLPPQPVAVV 53


>11_04_0451 - 17863381-17864808
          Length = 475

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 288 LVKLTISIFTTVHPPRHPQFLAPRANALSPL 380
           L  L+ S+     PP  P+ LAP A+ALS L
Sbjct: 50  LAALSASLSHPAFPPSAPRLLAPLASALSAL 80


>04_03_0865 + 20402711-20404057
          Length = 448

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 326 PAAAPPILGAQGKCP 370
           P AAPP + A+GKCP
Sbjct: 284 PKAAPPAMVAEGKCP 298


>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
            18443630-18443664,18444528-18444886,18445304-18445450,
            18445849-18447954,18448300-18448494,18448629-18448709,
            18448758-18448874,18449281-18449370,18449466-18449552,
            18450293-18450315,18450675-18450804
          Length = 1362

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 503  IFILWTQKHNGPNERKKAK-RNLKLYPPFYFRFINNSA-HSRREGGQGICPG 354
            ++I  T    G  + K+ + RNL+L PPF     + SA H +  GG+ I  G
Sbjct: 1092 VYITLTALPGGTRDLKRVRFRNLRLCPPFLETAGSVSARHKQNNGGKRIGHG 1143


>03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045
          Length = 126

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 317 NRAPAAAPPILGAQGKCPVPPPS 385
           N APAAAP    A    P PPPS
Sbjct: 7   NAAPAAAPAPAPAPTPAPPPPPS 29


>01_06_0364 -
           28749825-28750053,28750442-28750621,28751018-28751147,
           28751442-28751756,28752033-28752075,28752108-28752500
          Length = 429

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 428 PPFYFRFINNSAHSRREGGQGICPGRQELGVPR 330
           PP +F F N +   +R GG+G   GR    V R
Sbjct: 46  PPHHFAFSNLTTAPKRNGGKGEEEGRPRFEVVR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,015
Number of Sequences: 37544
Number of extensions: 325280
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)