Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F08
         (610 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma...    31   2.4  
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.     31   2.4  

>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
           protein 6 protein.
          Length = 1003

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 339 PQFLAPRANALSPLPPRVGAV-INKSEVKWGI*LQVSL 449
           P+FL PR NA SP PP   A+ +N     WG  L+ SL
Sbjct: 201 PRFL-PRGNAPSPAPPPPPAISLNAPSYNWGAALRSSL 237


>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
           MUCIN 1 PRECURSOR. ).
          Length = 1003

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 339 PQFLAPRANALSPLPPRVGAV-INKSEVKWGI*LQVSL 449
           P+FL PR NA SP PP   A+ +N     WG  L+ SL
Sbjct: 201 PRFL-PRGNAPSPAPPPPPAISLNAPSYNWGAALRSSL 237


>AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.
          Length = 967

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 339 PQFLAPRANALSPLPPRVGAV-INKSEVKWGI*LQVSL 449
           P+FL PR NA SP PP   A+ +N     WG  L+ SL
Sbjct: 165 PRFL-PRGNAPSPAPPPPPAISLNAPSYNWGAALRSSL 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,180,128
Number of Sequences: 237096
Number of extensions: 1846678
Number of successful extensions: 4375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4363
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)