Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F08
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41945-1|AAB51185.1|  429|Drosophila melanogaster cytoplasmic dy...    31   1.6  
AY069641-1|AAL39786.1|  625|Drosophila melanogaster LD40707p pro...    29   5.0  
AE014298-1441|AAF46578.1|  625|Drosophila melanogaster CG2221-PA...    29   5.0  
BT025116-1|ABE73287.1|  373|Drosophila melanogaster IP09809p pro...    29   6.6  
AE014298-3085|AAF50854.1|  308|Drosophila melanogaster CG15446-P...    29   6.6  

>L41945-1|AAB51185.1|  429|Drosophila melanogaster cytoplasmic
           dynein intermediatechain protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 375 PLPPRVGAVINKSEVK-WGI*LQVSLCFFSLIWSIVLLGPQYEYKD 509
           PL P  G +   S +K W + L +S C FS++  I    P Y ++D
Sbjct: 284 PLSPDFGHLFLTSSIKIWSLKLPISSCQFSVVSGINSNKPLYSFED 329


>AY069641-1|AAL39786.1|  625|Drosophila melanogaster LD40707p
           protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 581 NFVLKKSVDIKQIINGLICKNKVTVFIFILWTQKHNGP-------NERKKAKRNLKLYPP 423
           N  LK+SVD  +  N ++ +NK  V    LWT+    P       + R+     LK   P
Sbjct: 206 NASLKESVDFHEYYNSVLYENKDEV--ASLWTELKATPENIMLSSSHRRAMTVELKFDFP 263

Query: 422 FYFRFINN 399
           FY  F+ N
Sbjct: 264 FYGHFVRN 271


>AE014298-1441|AAF46578.1|  625|Drosophila melanogaster CG2221-PA
           protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 581 NFVLKKSVDIKQIINGLICKNKVTVFIFILWTQKHNGP-------NERKKAKRNLKLYPP 423
           N  LK+SVD  +  N ++ +NK  V    LWT+    P       + R+     LK   P
Sbjct: 206 NASLKESVDFHEYYNSVLYENKDEV--ASLWTELKATPENIMLSSSHRRAMTVELKFDFP 263

Query: 422 FYFRFINN 399
           FY  F+ N
Sbjct: 264 FYGHFVRN 271


>BT025116-1|ABE73287.1|  373|Drosophila melanogaster IP09809p
           protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 242 NPLSNDFL*FLANISLGKIDYINFYNRAPAAAPPILGA 355
           N LSN +   + N S+  +  I   N  P+A PPI GA
Sbjct: 244 NALSNQYYNHIMN-SISSLSQIQPLNSTPSANPPIFGA 280


>AE014298-3085|AAF50854.1|  308|Drosophila melanogaster CG15446-PA
           protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 242 NPLSNDFL*FLANISLGKIDYINFYNRAPAAAPPILGA 355
           N LSN +   + N S+  +  I   N  P+A PPI GA
Sbjct: 244 NALSNQYYNHIMN-SISSLSQIQPLNSTPSANPPIFGA 280


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,485,299
Number of Sequences: 53049
Number of extensions: 543334
Number of successful extensions: 1452
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)