Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F04
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    24   3.5  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    23   4.7  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    23   6.2  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    23   6.2  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.2  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    23   8.2  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 119 DNLYSCSKLFKYHLSSRRRVASGTI 45
           DN+Y C  +F  H +S   VA G +
Sbjct: 397 DNVYKCIHVFTGHTASVTAVALGPL 421


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 176 SHNRNCHFVLYNFLLAQLIDNLYSCSKL 93
           +H R+C  V +      + DN  S SKL
Sbjct: 71  THGRDCRLVTWKIDFNCMTDNFMSLSKL 98


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 235 LVTQKTAVHLSKLKTDRNPNLIIETAILSF 146
           L++    V+  K+  D NP+L +    LSF
Sbjct: 195 LISGLAGVYFEKVLKDTNPSLWVRNVQLSF 224


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 97  NYLNITCHPVDASRREQYGAFNQ 29
           ++LN+T H  D  R    G FN+
Sbjct: 597 DHLNLTVHKADFLRMRVVGQFNR 619


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = -2

Query: 251 YLIWSTG----NTENGCTPFKIK 195
           ++ W  G    + ENGC+PF +K
Sbjct: 24  FMTWIDGMKKTSDENGCSPFTLK 46


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 113 LYSCSKLFKYHLSSRRRV 60
           ++SC  L+K+  S R+R+
Sbjct: 1   MFSCQSLYKFSHSFRKRI 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,309
Number of Sequences: 5004
Number of extensions: 14706
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)