Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F04
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648     27   2.1  
09_01_0092 - 1311892-1312055,1312490-1312574,1312628-1312936,131...    25   6.4  
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           25   6.4  
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682           25   8.4  

>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
          Length = 587

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 238 ALVTQKTAVHLSKLKTDRNPNLIIETAILSFTIF 137
           A+V Q T V LS L++DR+     +    SFT+F
Sbjct: 361 AVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVF 394


>09_01_0092 -
           1311892-1312055,1312490-1312574,1312628-1312936,
           1314155-1314229,1314363-1314438,1315594-1315679,
           1315958-1316203,1316399-1316614
          Length = 418

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 143 NFLLAQLIDNLYSCSKLFKYHLSSRRRV 60
           N  ++ L D L  CSKLF+ +L  R+ V
Sbjct: 211 NNTISVLPDELAGCSKLFRLNLEVRKGV 238


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 30  WLNAPYCSRRDASTG 74
           WL+ P+ + RDA+TG
Sbjct: 121 WLHPPFAAHRDAATG 135


>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
          Length = 186

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 232 VTQKTAVHLSKLKTDRNPNLIIETAI 155
           +T+K   HL+K++ +RN +L +   +
Sbjct: 69  LTEKALKHLNKMRAERNEDLCLRIGV 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,929,241
Number of Sequences: 37544
Number of extensions: 81981
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)