Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F04
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine re...    27   1.8  
Z92797-2|CAB07236.1|  425|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL132851-3|CAB60415.1|  251|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein15 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 158 HFVLYNFLLAQLIDNLYSCSKLFKYHLSSRRRVASGTIWCV 36
           +F+L NF   QL  + Y C     YH+    +    TI+C+
Sbjct: 22  YFILNNF---QLNQDWYVCPNNVSYHIGVEHKFWGATIFCM 59


>Z92797-2|CAB07236.1|  425|Caenorhabditis elegans Hypothetical
           protein H25P06.4 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 97  NYLNITCHPVDASRREQYGAFNQNTEL 17
           +Y +++  P+D + R+  GAF++N EL
Sbjct: 32  SYKSLSAKPIDVAFRKLTGAFSKNYEL 58


>AL132851-3|CAB60415.1|  251|Caenorhabditis elegans Hypothetical
           protein Y53H1B.6 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 97  NYLNITCHPVDASRREQYGAFNQNTEL 17
           +Y +++  P+D + R+  GAF++N EL
Sbjct: 32  SYKSLSAKPIDVAFRKLTGAFSKNYEL 58


>Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical
           protein F14F8.6 protein.
          Length = 385

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 222 KRLYTFQN*KRIVILIS*SKLPFCPLQFFIGTV 124
           K L T ++    VI I+   LPFC L FF+ T+
Sbjct: 162 KSLITSESGLCTVITITILILPFCCLSFFLRTL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,421,902
Number of Sequences: 27780
Number of extensions: 82280
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)