Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F03
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    29   0.37 
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    28   0.84 
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.9  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   7.9  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 475 QEFSPIYNHACCCIILQFSS*LCKMHPWRVASKVYRCQRSVCNILERLSR 326
           Q  S I  H  CC     +S   K  PW  A+KV + ++ + N +E   R
Sbjct: 730 QYMSDIELHNLCCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDR 779


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 432 YSSFLHSYVKCILGELRVRFTDVNGLCVIYWSVCLEPE 319
           Y+S + S+V  +L   R R+T      +I+W+  L+PE
Sbjct: 340 YNSLIKSFVNTVLKTFRCRYTQF----LIFWASQLDPE 373


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +1

Query: 262 LEHSQRAWQKTLSTSARGYLWLETNAPIYY-TQTVDICKPYSQLSKDAF---YIAMK--K 423
           LEH  +A +      ++G LW    A IY+ T    +     +LS D+     IAMK   
Sbjct: 274 LEHCLQAVKDIRKRYSKGALWAVMEAKIYFLTGESQMALEMEELSIDSSMEQIIAMKGFD 333

Query: 424 TGVLYNNMRGY 456
           T +LY  MR +
Sbjct: 334 TAMLYVGMRKF 344


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 442 CCIILQFSS*LCKMHPWRVASKVYRCQRSV 353
           CC+   FS  + + + WR A+ +  C R +
Sbjct: 211 CCLFTPFSYAILRSYIWRFAALLTSCCRRI 240


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 223 KSATGKLFNDLGILEHSQRAWQKTLSTSARGYL 321
           K A  KLF+    L H +  W      SA GY+
Sbjct: 289 KLAKSKLFHKYSTLGHIEYRWVDGAGGSAEGYV 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,546
Number of Sequences: 5004
Number of extensions: 39663
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)