Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F03
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0340 + 24517562-24520318                                         29   1.9  
11_06_0512 - 24460391-24462337                                         29   2.6  
11_06_0652 - 25906001-25906237,25906345-25906830                       27   5.9  
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642...    27   5.9  
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    27   7.8  

>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -2

Query: 148 PRTMGTLLLLVILSRISCYILNHYSRELIKLQKILKPVDKND 23
           P ++G L  LVIL   +C+ L    +E++KL K L+ +D +D
Sbjct: 667 PNSIGKLSRLVILDLKACHNLEDLPKEIVKLVK-LEYLDVSD 707


>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 148 PRTMGTLLLLVILSRISCYILNHYSRELIKLQKI 47
           P  +G L  LV+L   +C+ L   ++E+ KLQK+
Sbjct: 384 PAAIGELAELVVLDLRACHDLQVLAKEITKLQKL 417


>11_06_0652 - 25906001-25906237,25906345-25906830
          Length = 240

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 454 NHACCCIILQFSS*LCKMHPWRVASKVYRCQRSVCNILERLSRARDSRVQKLIEFSAKHA 275
           N A C  + + +  + K+ P   +  V R   +  NIL RL  A D  +Q L+E      
Sbjct: 24  NAASCKELAERAQQVAKILPDSNSKAVARGDATAANILRRLRGALDDALQ-LVESCQSGG 82

Query: 274 GCV 266
           GC+
Sbjct: 83  GCL 85


>02_05_0309 +
           27762613-27763070,27763940-27764060,27764168-27764287,
           27764633-27764863,27764964-27765503
          Length = 489

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -1

Query: 263 NIPRSLNSFPVALFGKLPLTLETSYVTR-----PAMLTSKKKLAQNHG 135
           ++PR   S  V++FG  P +++ SY  R       +LT +KKL Q  G
Sbjct: 144 DVPRPAPSASVSVFGVSPTSMQCSYDNRGNSVPTILLTMQKKLYQLGG 191


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 367 ICKPYSQLSKDAFYIAMKKTGVLYNNMRGYISEKTP 474
           +C  +  +SKDA     + +G  Y  M  Y +E  P
Sbjct: 213 VCSAFLNISKDAITGVNQTSGGYYKRMHDYFNEHKP 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,374
Number of Sequences: 37544
Number of extensions: 226063
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)