Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F03
         (476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068479-1|AAH68479.1|  689|Homo sapiens hypothetical protein FL...    54   3e-07
AK074981-1|BAC11331.1|  486|Homo sapiens protein ( Homo sapiens ...    54   3e-07
AK000261-1|BAA91038.1|  431|Homo sapiens protein ( Homo sapiens ...    54   3e-07
AC013472-3|AAY14654.1|  431|Homo sapiens unknown protein.              54   3e-07
J00191-1|AAA36218.1|  359|Homo sapiens protein ( Human MHC class...    29   6.3  
AM261745-1|CAK12620.1|  362|Homo sapiens MHC class I antigen pro...    29   8.3  

>BC068479-1|AAH68479.1|  689|Homo sapiens hypothetical protein
           FLJ20254 protein.
          Length = 689

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 44/86 (51%)
 Frame = +1

Query: 136 PWFWASFFLLVSIAGLVTYDVSRVNGNFPKSATGKLFNDLGILEHSQRAWQKTLSTSARG 315
           PW      LLV   G + +D+ R + +F  S TG+L    G L  SQ+A  K  S S +G
Sbjct: 481 PWTRLLLLLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQG 539

Query: 316 YLWLETNAPIYYTQTVDICKPYSQLS 393
           Y WL    P++ +  + + +P  QL+
Sbjct: 540 YSWLGETLPLWGSHLLTVVRPSLQLA 565


>AK074981-1|BAC11331.1|  486|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90500 fis, clone NT2RP3004025. ).
          Length = 486

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 44/86 (51%)
 Frame = +1

Query: 136 PWFWASFFLLVSIAGLVTYDVSRVNGNFPKSATGKLFNDLGILEHSQRAWQKTLSTSARG 315
           PW      LLV   G + +D+ R + +F  S TG+L    G L  SQ+A  K  S S +G
Sbjct: 278 PWTRLLLLLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQG 336

Query: 316 YLWLETNAPIYYTQTVDICKPYSQLS 393
           Y WL    P++ +  + + +P  QL+
Sbjct: 337 YSWLGETLPLWGSHLLTVVRPSLQLA 362


>AK000261-1|BAA91038.1|  431|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20254 fis, clone COLF6926. ).
          Length = 431

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 44/86 (51%)
 Frame = +1

Query: 136 PWFWASFFLLVSIAGLVTYDVSRVNGNFPKSATGKLFNDLGILEHSQRAWQKTLSTSARG 315
           PW      LLV   G + +D+ R + +F  S TG+L    G L  SQ+A  K  S S +G
Sbjct: 223 PWTRLLLLLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQG 281

Query: 316 YLWLETNAPIYYTQTVDICKPYSQLS 393
           Y WL    P++ +  + + +P  QL+
Sbjct: 282 YSWLGETLPLWGSHLLTVVRPSLQLA 307


>AC013472-3|AAY14654.1|  431|Homo sapiens unknown protein.
          Length = 431

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 44/86 (51%)
 Frame = +1

Query: 136 PWFWASFFLLVSIAGLVTYDVSRVNGNFPKSATGKLFNDLGILEHSQRAWQKTLSTSARG 315
           PW      LLV   G + +D+ R + +F  S TG+L    G L  SQ+A  K  S S +G
Sbjct: 223 PWTRLLLLLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQG 281

Query: 316 YLWLETNAPIYYTQTVDICKPYSQLS 393
           Y WL    P++ +  + + +P  QL+
Sbjct: 282 YSWLGETLPLWGSHLLTVVRPSLQLA 307


>J00191-1|AAA36218.1|  359|Homo sapiens protein ( Human MHC class I
           transplantation antigen (hla) gene. ).
          Length = 359

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 322 WLETNAPIYYTQTVDICKPYSQLSKDAFYIAMK 420
           W+E   P Y+ +   ICK  +Q  ++   IA++
Sbjct: 72  WMEREGPKYWDRNTQICKAQAQTERENLRIALR 104


>AM261745-1|CAK12620.1|  362|Homo sapiens MHC class I antigen
           protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 322 WLETNAPIYYTQTVDICKPYSQLSKDAFYIAMK 420
           W+E   P Y+ +   ICK  +Q  ++   IA++
Sbjct: 75  WIEQEGPEYWDRNTQICKTNTQTDRENLRIALR 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,101,635
Number of Sequences: 237096
Number of extensions: 1366765
Number of successful extensions: 2657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2657
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)