Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F03
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical pr...    30   0.75 
Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical pr...    30   0.75 
Z47068-5|CAA87333.1|  162|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   1.3  
AF068718-3|AAO21430.1|   82|Caenorhabditis elegans Cystatin-like...    29   1.7  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    29   1.7  
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z74046-4|CAC42385.1|  162|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z74028-9|CAC42259.1|  162|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    27   5.3  
U53181-5|AAO12439.1|  250|Caenorhabditis elegans Heavy chain, un...    27   9.2  
U53181-4|AAO12438.1|  440|Caenorhabditis elegans Heavy chain, un...    27   9.2  
U53181-3|AAM29688.1|  516|Caenorhabditis elegans Heavy chain, un...    27   9.2  
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    27   9.2  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    27   9.2  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        27   9.2  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical
           protein T03F6.2 protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 118 QVIEVFPWFWASFFLLVSIAGLVTYDVSRVNGNFPK---SATGKLFNDLGILEHSQR 279
           Q +  F  FW+SF    S A L  YD+++ +  F         K F D+G  E +++
Sbjct: 169 QTVNGFYGFWSSFSTTRSFAWLDHYDITQASNRFESRQIDQENKKFRDVGKQERNEQ 225


>Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical
           protein ZK856.1 protein.
          Length = 765

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 223 KSATGKLFNDLGILEHSQRAWQKTLSTSARGYLWLETNAP 342
           K   G L N+LG+LE+   A +K      R   +LE N+P
Sbjct: 200 KKICGNLLNELGVLEYMVYADKKLEEEQQRAKRYLEMNSP 239


>Z47068-5|CAA87333.1|  162|Caenorhabditis elegans Hypothetical
           protein F15G9.3 protein.
          Length = 162

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 165 QQEKASPEPWEHFYYLSFSLEYPVI 91
           +QE++S +PW+ F+Y  +S + P I
Sbjct: 67  RQERSSGDPWDEFFYRIYSADKPRI 91


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 311  RAEVDRVFCQARWLCSNIPRSLNSFPVALFGKLP 210
            +A    +FC  +  C++I  +LN  PVA+FG +P
Sbjct: 1502 KATGSEIFCPGK--CASIQATLNQDPVAIFGCVP 1533


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 311  RAEVDRVFCQARWLCSNIPRSLNSFPVALFGKLP 210
            +A    +FC  +  C++I  +LN  PVA+FG +P
Sbjct: 1502 KATGSEIFCPGK--CASIQATLNQDPVAIFGCVP 1533


>AF068718-3|AAO21430.1|   82|Caenorhabditis elegans Cystatin-like
           protease inhibitorprotein 1, isoform b protein.
          Length = 82

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +1

Query: 196 VSRVNGNFPKSATGKLFNDLGILEHSQRAWQKTLSTSARGYLWLETNAPIYYTQTVDICK 375
           +S ++ N      G +  D    E+S +AW+     + +       N P YY   + +C 
Sbjct: 12  ISIISVNAGMMTGGSVEQDASQKEYSDKAWKAVKGINDQA----SNNGPYYYAP-IKVCD 66

Query: 376 PYSQLSKDAFYIA 414
           PY + ++D   +A
Sbjct: 67  PYERGAEDRTALA 79


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 124 IEVFPWFWASFFLLVSIAGLVTYDVSRVNGNFPKSATGKLFNDLGILEHSQRA 282
           I +F WFW +F L+ +    V +   R + N        L N  GI    Q+A
Sbjct: 263 IFIFLWFWFAFLLVATAGDFVIWVWRRFDSNSKLGFILDLLNQEGIDHSPQKA 315


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 30  LSTGFKIFCNFINSRE**FKI*QDILERMTSNRSVPMVLG 149
           LST  +I  NFINS +  F +  D L+    N  VP  LG
Sbjct: 57  LSTHIRISMNFINSFQVYFYLNIDALQSTCRNSKVPSKLG 96


>Z74046-4|CAC42385.1|  162|Caenorhabditis elegans Hypothetical
           protein C14C10.6 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 262 LEHSQRAWQKTLSTSARGYLWL---ETNAPIYYTQTV 363
           +E S RAW   +   A G +W+   + N+  +YT T+
Sbjct: 1   MERSTRAWMSIVVVQAMGSVWMCYAKQNSASHYTSTL 37


>Z74028-9|CAC42259.1|  162|Caenorhabditis elegans Hypothetical
           protein C14C10.6 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 262 LEHSQRAWQKTLSTSARGYLWL---ETNAPIYYTQTV 363
           +E S RAW   +   A G +W+   + N+  +YT T+
Sbjct: 1   MERSTRAWMSIVVVQAMGSVWMCYAKQNSASHYTSTL 37


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +1

Query: 142 FWASFFLLVSIAGLVTYDVSRVNGNFPKSATGKLFNDLGILEHSQ---RAW---QKTLST 303
           F+  FF++VS  G   Y   ++  +F K    K FN   IL H Q   R+W   +K +S 
Sbjct: 530 FFILFFVIVSPFGFAYYSYLKMWHHFEKFEKEKQFNS-SILWHRQLHLRSWNRIEKEMSE 588

Query: 304 SARGY 318
             R +
Sbjct: 589 EQRNF 593


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 340 PIYYTQTVDICKPYS-QLSKDAFYIAMKKTGVLYNNMRGYI 459
           P  YT    IC P S  +   AF+I + KT   +NN R ++
Sbjct: 11  PFGYTVVHYICTPLSFPMYSLAFFILLFKTPSYFNNYRNFL 51


>U53181-5|AAO12439.1|  250|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform f protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 164 WLALLVL*HMMFQESMVTSQKAQQENYSMTSV 259
           W+  L L +MMF+  +   +KA Q  +++T +
Sbjct: 82  WMCALALNYMMFRRELCNFEKAIQIKHNVTQI 113


>U53181-4|AAO12438.1|  440|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform e protein.
          Length = 440

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 164 WLALLVL*HMMFQESMVTSQKAQQENYSMTSV 259
           W+  L L +MMF+  +   +KA Q  +++T +
Sbjct: 272 WMCALALNYMMFRRELCNFEKAIQIKHNVTQI 303


>U53181-3|AAM29688.1|  516|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform c protein.
          Length = 516

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 164 WLALLVL*HMMFQESMVTSQKAQQENYSMTSV 259
           W+  L L +MMF+  +   +KA Q  +++T +
Sbjct: 348 WMCALALNYMMFRRELCNFEKAIQIKHNVTQI 379


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 164  WLALLVL*HMMFQESMVTSQKAQQENYSMTSV 259
            W+  L L +MMF+  +   +KA Q  +++T +
Sbjct: 1669 WMCALALNYMMFRRELCNFEKAIQIKHNVTQI 1700


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 164  WLALLVL*HMMFQESMVTSQKAQQENYSMTSV 259
            W+  L L +MMF+  +   +KA Q  +++T +
Sbjct: 1671 WMCALALNYMMFRRELCNFEKAIQIKHNVTQI 1702


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 164  WLALLVL*HMMFQESMVTSQKAQQENYSMTSV 259
            W+  L L +MMF+  +   +KA Q  +++T +
Sbjct: 1671 WMCALALNYMMFRRELCNFEKAIQIKHNVTQI 1702


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 239 NYSMTSVY*NTASVLGRKLYQLLHAAISGS 328
           N+     Y  TA+ LGR L  LLH AI  S
Sbjct: 243 NFKNVVYYKGTATTLGRGLQPLLHDAIISS 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,805
Number of Sequences: 27780
Number of extensions: 213376
Number of successful extensions: 610
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)