Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F03
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 121 VIEVFPWFWASFFLLVSI 174
           VI  F WFW + F ++ +
Sbjct: 173 VIIAFTWFWVTPFTVLPL 190


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 193 DVSRVNGNFPKSATGKLFNDLGILEHSQRAWQKTLSTSARGYLW 324
           +VSR        A GK+  +L IL + +R    T +T  +  LW
Sbjct: 148 EVSRDGKYLSTLAPGKVLGELAILYNCKRTATITAATDCQ--LW 189


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 121 VIEVFPWFWASFFLLVSI 174
           VI  F WFW + F ++ +
Sbjct: 173 VIIAFTWFWVTPFTVLPL 190


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 99  DILERMTSNRSVPMVL 146
           ++LER   N S P+VL
Sbjct: 36  NVLERPVGNESEPLVL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,338
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)