Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F02
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.5  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    27   1.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   5.9  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   5.9  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 340 SFPSPQWQAQKSGLFLYLPSEGKASRYQLPPLFHPLNQGASRSSLDS 200
           S  S Q Q +    F       ++S Y LPP  HP ++  + SSL +
Sbjct: 40  SSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPSKNPTSSSLST 86


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 346 INSFPSPQWQAQKSGLFLYLPSEGKASRYQLPP 248
           INS P P+W     G  L  P +     ++L P
Sbjct: 109 INSLPIPEWTLHIEGRLLVNPDDEDDKAFELAP 141


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 18  RRVFSASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNRE 164
           +R+FS    + +ER  +  +    +  E +R ++  E ER++KE + +E
Sbjct: 99  QRIFSEKQRLEQERFNRELLEK--KRIEAERQRLKDEEERRKKELMEKE 145


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 262 TCLLFLRREDTGRGPIFGPATGVTGSYLFNPVSP 363
           T L+  RR  T  G   GP+   TGS  ++P SP
Sbjct: 11  TGLVTPRRYSTMTGIRTGPSQSGTGSIPYSPTSP 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,734
Number of Sequences: 5004
Number of extensions: 39794
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)