Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F02
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 31 0.36
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 31 0.64
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 30 0.84
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 29 2.6
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 29 2.6
08_02_1012 + 23550314-23551504 28 3.4
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 28 4.5
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 28 4.5
04_04_0431 + 25155091-25155384 28 4.5
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 28 4.5
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 28 4.5
06_03_0661 + 23225514-23227073 27 5.9
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 27 7.8
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 27 7.8
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 308 IGPLPVSSLRRKSKQVPAAPSFSPVKPRSLPLLSGFMSFHKKS 180
+ +P R +K++ APSF P+ PR P L F FH K+
Sbjct: 394 LAKIPKFRARPFNKKIAEAPSFPPL-PRKAPQLPEFNEFHLKT 435
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 21 RVFSASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKE 149
+V S+S H+ R P +GR K KK V GE+++ RKE
Sbjct: 385 KVASSSSHLSRSWPNEGR-------KSKKYQSVPGEKKKHRKE 420
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 30.3 bits (65), Expect = 0.84
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 332 VTPVAGPKIGPLPVSSLRRKSKQVPAAPSFSPV 234
+ P + P + PLP+S ++R P A SP+
Sbjct: 351 IEPASSPPVNPLPLSRVKRPRPNAPPASPESPI 383
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -2
Query: 335 PVTPVAGPKIGPLPVSSL-----RRKSKQVPAAPSFSPVKPRSL 219
P PVA P + + +S+ RRK K P A SPV P S+
Sbjct: 18 PRKPVAAPAVAQMDLSTPSKPTPRRKPKAPPVAAPMSPVTPSSV 61
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 311 KIGPLPVSSLRRKSKQVPAAPSFSPVKPRS 222
++GPLP S ++ VP P+ +P PRS
Sbjct: 172 RVGPLPRGSPPPYAQSVPVGPAAAPPPPRS 201
>08_02_1012 + 23550314-23551504
Length = 396
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 290 SSLRRKSKQVPAAPSFSPVKPRSLPL 213
SS +KQ PAA F P+ P SLPL
Sbjct: 306 SSSSSPTKQAPAALGFYPMGPYSLPL 331
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 9 DRHRRVFSASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNREG 167
D HRR A RR + G + + + ++ H+ E R R+ G +R+G
Sbjct: 23 DHHRRRHDADDDHRRHKRGGGGDDDD-DRRRRRHHRDDEEESRSRRHGHHRDG 74
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 302 PLPVSSLRRKSKQVPAAPSFSPVKPRSLP 216
PLP + L ++ +PA P S ++P SLP
Sbjct: 421 PLPGALLPQEMTHMPATPPLSALEPGSLP 449
>04_04_0431 + 25155091-25155384
Length = 97
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 33 ASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEG 152
A+P R R G V EA+ + RH G R R R+ G
Sbjct: 17 AAPRRWRRRRRGGGVGGTVEAERQSRHGGGGRRRRGRRRG 56
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 334 PSPQWQAQKSGLFLYLPSEGKASRYQLPPLFHPLNQGASRSSLDSC 197
P P ++ QK ++ Y+ +QLP P+ G +R + +C
Sbjct: 1079 PKPYYEPQKDQVYCYVSPIFSRHNWQLPLHSLPIQDGTNRLQVFAC 1124
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = -2
Query: 317 GPKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLPLLSGFMSFHKKS*LGGAF 162
GP+ P+ + + +P APS SPV RSL LSG K+S G F
Sbjct: 188 GPRPCPVCYVPVEQALALMPGAPSASPVL-RSLNYLSGDNLISKESNHGSLF 238
>06_03_0661 + 23225514-23227073
Length = 519
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 258 WYLLAFP-SEGRYRKRPDFWACHWGDG 335
WY LA+ ++GR RKR W +G G
Sbjct: 450 WYELAYTEAKGRIRKRDRIWQIAFGSG 476
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 27.1 bits (57), Expect = 7.8
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +1
Query: 205 PERSGRLLGLTGEKEGAAGTCLLFLRREDTGRGPIFGPATGVTGSYLFNPVSPPLRR*IV 384
P R+G LL L ++ L + RR G G G A T + + S PLRR +
Sbjct: 7 PRRAGALL-LAAAAAASSSGALAYDRRGGDGDGDGDGEAFSTTTTAVRISASSPLRRALS 65
Query: 385 PWVLVSIPGAS 417
+PG S
Sbjct: 66 SAASGILPGGS 76
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 48 RRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNR 161
R+ER + R + + +KR + ERERK+KE R
Sbjct: 140 RKEREEEERRRRRKDKERRKRKEKERERERKKKEKKKR 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,854
Number of Sequences: 37544
Number of extensions: 331029
Number of successful extensions: 1015
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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