Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F02
         (477 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   4.1  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   5.5  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   5.5  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 6   RDRHRRVFSASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNRE 164
           R+R +R        +RE+  + R     E +E+++ +   ERE  R+    RE
Sbjct: 478 REREQREKEQREKEQREKEERERQQREKEQREREQREKEREREAARERERERE 530


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 77   HSPLCRALSSNMRRSRKHPPVPVP 6
            H+   RA     RRS+  PP P P
Sbjct: 1115 HNEANRAYRQRNRRSQPTPPAPPP 1138


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 320 AGPKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLPLLSG 204
           AGP   P P  S+   +  +P  P   P  P + PLL G
Sbjct: 69  AGP---PKPNISIPPPTMNMPPRPGMIPGMPGAPPLLMG 104


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,999
Number of Sequences: 2352
Number of extensions: 10419
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 42095889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)