Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F02
(477 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051860-1|AAK93284.1| 594|Drosophila melanogaster LD35730p pro... 30 1.4
AE014134-1223|AAN10614.1| 594|Drosophila melanogaster CG11266-P... 30 1.4
AE014134-1222|AAF52478.1| 594|Drosophila melanogaster CG11266-P... 30 1.4
AF298216-1|AAG30224.1| 2130|Drosophila melanogaster DNA polymera... 28 7.5
AF298215-1|AAG30223.1| 2130|Drosophila melanogaster DNA polymera... 28 7.5
AE013599-501|AAF59191.2| 2130|Drosophila melanogaster CG1925-PA ... 28 7.5
BT009987-1|AAQ22456.1| 888|Drosophila melanogaster RE51676p pro... 27 9.9
AF030155-1|AAC38985.1| 1666|Drosophila melanogaster translation ... 27 9.9
AE014134-2743|AAS64715.1| 241|Drosophila melanogaster CG4711-PA... 27 9.9
>AY051860-1|AAK93284.1| 594|Drosophila melanogaster LD35730p
protein.
Length = 594
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 48 RRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNRE 164
RR+R + R S+ + KE+ R++ G+R+R R+EG +R+
Sbjct: 81 RRDRGNE-RSSHRDKDKERDRNRDGGDRDRHRREGGDRD 118
>AE014134-1223|AAN10614.1| 594|Drosophila melanogaster CG11266-PB,
isoform B protein.
Length = 594
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 48 RRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNRE 164
RR+R + R S+ + KE+ R++ G+R+R R+EG +R+
Sbjct: 81 RRDRGNE-RSSHRDKDKERDRNRDGGDRDRHRREGGDRD 118
>AE014134-1222|AAF52478.1| 594|Drosophila melanogaster CG11266-PA,
isoform A protein.
Length = 594
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 48 RRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNRE 164
RR+R + R S+ + KE+ R++ G+R+R R+EG +R+
Sbjct: 81 RRDRGNE-RSSHRDKDKERDRNRDGGDRDRHRREGGDRD 118
>AF298216-1|AAG30224.1| 2130|Drosophila melanogaster DNA polymerase
zeta catalyticsubunit protein.
Length = 2130
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 338 LPVTPVAGPKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLP 216
LP A ++ P+ S+ KSK P+ +P+ +SLP
Sbjct: 540 LPQIDGADDRLQRTPIKSISSKSKSSPSKTPTTPIGQKSLP 580
>AF298215-1|AAG30223.1| 2130|Drosophila melanogaster DNA polymerase
zeta catalyticsubunit protein.
Length = 2130
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 338 LPVTPVAGPKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLP 216
LP A ++ P+ S+ KSK P+ +P+ +SLP
Sbjct: 540 LPQIDGADDRLQRTPIKSISSKSKSSPSKTPTTPIGQKSLP 580
>AE013599-501|AAF59191.2| 2130|Drosophila melanogaster CG1925-PA
protein.
Length = 2130
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 338 LPVTPVAGPKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLP 216
LP A ++ P+ S+ KSK P+ +P+ +SLP
Sbjct: 540 LPQIDGADDRLQRTPIKSISSKSKSSPSKTPTTPIGQKSLP 580
>BT009987-1|AAQ22456.1| 888|Drosophila melanogaster RE51676p
protein.
Length = 888
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -2
Query: 449 LPDGVCRTRKREAPGILTKTHGTIYRLRGGETGLNK*-LPV--TPVAGPKIGPLPVSSLR 279
L +G R ++E+ G+ T + +G E+ N +P+ TP++ +GP P+ S
Sbjct: 266 LSEGPIRIPQQESVGLNNLTSTSS---QGSESRTNAPYIPIETTPISRTDVGPTPIVSAM 322
Query: 278 RKSKQVPAAPSFSPVKPRSLPLLS 207
+ V P+ + + +P++S
Sbjct: 323 TDAPSVEILPTPQRGRSKKIPIVS 346
>AF030155-1|AAC38985.1| 1666|Drosophila melanogaster translation
initiation factoreIF4G protein.
Length = 1666
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -2
Query: 449 LPDGVCRTRKREAPGILTKTHGTIYRLRGGETGLNK*-LPV--TPVAGPKIGPLPVSSLR 279
L +G R ++E+ G+ T + +G E+ N +P+ TP++ +GP P+ S
Sbjct: 266 LSEGPIRIPQQESVGLNNLTSTSS---QGSESRTNAPYIPIETTPISRTDVGPTPIVSAM 322
Query: 278 RKSKQVPAAPSFSPVKPRSLPLLS 207
+ V P+ + + +P++S
Sbjct: 323 TDAPSVEILPTPQRGRSKKIPIVS 346
>AE014134-2743|AAS64715.1| 241|Drosophila melanogaster CG4711-PA
protein.
Length = 241
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 338 LPVTPVAGPKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLP 216
LPV P P GP+ + +R KQ P KPR +P
Sbjct: 127 LPVLPEVKPPEGPIKI--IRNGRKQFPLITDPEFFKPRKIP 165
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,096,444
Number of Sequences: 53049
Number of extensions: 500368
Number of successful extensions: 1514
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1643002263
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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