Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_F02
(477 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical pr... 28 3.0
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z77136-9|CAI91180.1| 474|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z77136-7|CAD54177.1| 472|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z77136-6|CAB00883.1| 488|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z70780-5|CAD91633.1| 779|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81058-9|CAD42643.1| 130|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 27 9.2
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 27 9.2
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 27 9.2
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 27 9.2
>U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical
protein F48A9.1 protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 9 DRHRRVF-SASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNRE 164
DRHR + S SP R SNG E + K ++ ER+R+ ++ NRE
Sbjct: 197 DRHRNIANSVSPG------QYSRRSNGYEDRRKDTEELRDERKRENEQNQNRE 243
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 314 PKIGPLPVSSLRRKSKQVPAAPSFSPVKPRSLPLLSGFM 198
P++ LP+ + RRKS P AP P+ +P+++G +
Sbjct: 287 PELADLPLPAGRRKSTAAPRAPP----APKPIPVINGVL 321
>Z77136-9|CAI91180.1| 474|Caenorhabditis elegans Hypothetical
protein ZC376.7c protein.
Length = 474
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 331 TGSYLFNPVSPPLRR*IVPWVLVSIPGASRLRVLHTPSGNSNLENTSPV 477
+G L++P+ PP + L S AS L L TPS E+ +PV
Sbjct: 261 SGISLYDPMIPPPSSHFPSFNLSSSSSASNLLRLSTPSAPMQQEHRAPV 309
>Z77136-7|CAD54177.1| 472|Caenorhabditis elegans Hypothetical
protein ZC376.7b protein.
Length = 472
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 331 TGSYLFNPVSPPLRR*IVPWVLVSIPGASRLRVLHTPSGNSNLENTSPV 477
+G L++P+ PP + L S AS L L TPS E+ +PV
Sbjct: 259 SGISLYDPMIPPPSSHFPSFNLSSSSSASNLLRLSTPSAPMQQEHRAPV 307
>Z77136-6|CAB00883.1| 488|Caenorhabditis elegans Hypothetical
protein ZC376.7a protein.
Length = 488
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 331 TGSYLFNPVSPPLRR*IVPWVLVSIPGASRLRVLHTPSGNSNLENTSPV 477
+G L++P+ PP + L S AS L L TPS E+ +PV
Sbjct: 275 SGISLYDPMIPPPSSHFPSFNLSSSSSASNLLRLSTPSAPMQQEHRAPV 323
>Z70780-5|CAD91633.1| 779|Caenorhabditis elegans Hypothetical
protein F46B6.5c protein.
Length = 779
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 3 TRDRHRRVFSA--SPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNR 161
T RHRR A S +++ +R + S+ A EK+ E+ERKRK+ +R
Sbjct: 498 TITRHRRYSEAHHSTNVQSDRESISSTSSRSNAPEKRERDA--EKERKRKDKEHR 550
>Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical
protein F46B6.5a protein.
Length = 828
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 3 TRDRHRRVFSA--SPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRKEGVNR 161
T RHRR A S +++ +R + S+ A EK+ E+ERKRK+ +R
Sbjct: 498 TITRHRRYSEAHHSTNVQSDRESISSTSSRSNAPEKRERDA--EKERKRKDKEHR 550
>Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical
protein F11D11.5 protein.
Length = 254
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 452 ELPDGVCRTRKREAPGILTKTHGTIYRLRGGETG 351
ELPD C +E +T T+G IY + + G
Sbjct: 71 ELPDATCPASYKEIKFSVTSTNGEIYSWKKTDNG 104
>Z81058-9|CAD42643.1| 130|Caenorhabditis elegans Hypothetical
protein F11E6.9 protein.
Length = 130
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 249 GGSWYLLAFPSEGRYRKRPDFWACHWGDGKL 341
GG+ Y FP +G R + C WG +L
Sbjct: 98 GGTIYYKVFPKDGPAAVRSEGMLCSWGQCRL 128
>Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical
protein F26E4.3 protein.
Length = 491
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 90 EAKEKKRHKVAGERERKRKEG 152
E K+KKR K +RER RK G
Sbjct: 12 EPKKKKRKKTLLKRERNRKRG 32
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 26.6 bits (56), Expect = 9.2
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 12 RHRRVFSASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERER------KRKEGVNREGAP 173
+H++ P T S+ E KE+++ + ERER K K+G E P
Sbjct: 406 KHKKDKHDIPSTSSAASTSSSSSSKHETKEERKARKEKERERAEKKAKKEKDGHREEEKP 465
Query: 174 *S*LLVKRHESREER 218
K+HE+ EER
Sbjct: 466 KK--KDKKHETEEER 478
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 33 ASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRK 146
+SP +R+ + R S+ K+ + A E+ RKRK
Sbjct: 181 SSPERQRDVSSSSRTSSSSSTSSMKQEETADEKSRKRK 218
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 33 ASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRK 146
+SP +R+ + R S+ K+ + A E+ RKRK
Sbjct: 952 SSPERQRDVSSSSRTSSSSSTSSMKQEETADEKSRKRK 989
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 33 ASPHIRRERPTQGRVSNG*EAKEKKRHKVAGERERKRK 146
+SP +R+ + R S+ K+ + A E+ RKRK
Sbjct: 949 SSPERQRDVSSSSRTSSSSSTSSMKQEETADEKSRKRK 986
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,787
Number of Sequences: 27780
Number of extensions: 239656
Number of successful extensions: 777
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -