Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_F01
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   2.2  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   2.9  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   5.0  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 347 YYLRTS*IKQVEKRLIPLISMFCEPIEKIYPFEKYYSSSLLRRLMTLAAHHT 192
           Y L +S +K     LIPL   FC  ++K++  +   S  +L     L  H+T
Sbjct: 201 YLLHSSNLKAFINPLIPLTQKFCVQLQKLFA-DLTVSDQMLFLNQLLLEHNT 251


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 317 VEKRLIPLISMFCEPIEKIYPFEKYYSSSLLR 222
           V + ++PLIS+F   +  IY F K    SL R
Sbjct: 121 VIQSILPLISLFTNNLVSIYIFNKAAEGSLSR 152


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 323 KQVEKRLIPLISMFCEPIEKIYPFEKYYSSSLLRRLMTLAAH 198
           K VEKR+ P  +   +  +++  FEK +    ++  M+L+ +
Sbjct: 181 KGVEKRIAPNENFVADKTDELNEFEKEFRPFFIKHQMSLSKY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,775
Number of Sequences: 5004
Number of extensions: 39470
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)