Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E24
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   4.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.6  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 200 TKKMEYKTRQWHEKCFCCVV 259
           TK   +   QWH K F  V+
Sbjct: 66  TKNYPFDVDQWHNKTFLAVI 85


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 200 TKKMEYKTRQWHEKCFCCVVCKNPI 274
           TK       QWH K F  V+  N +
Sbjct: 67  TKNYPLDVDQWHNKTFLAVIRYNGV 91


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 465  NRCPASEVLQWGQVKHSRCHGSFLY 391
            +R  +S  L  G++KH R    F+Y
Sbjct: 1795 SRTESSNQLDAGKLKHIRAVSDFIY 1819


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 465  NRCPASEVLQWGQVKHSRCHGSFLY 391
            +R  +S  L  G++KH R    F+Y
Sbjct: 1791 SRTESSNQLDAGKLKHIRAVSDFIY 1815


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 347 RCVKCNKIITQGGVTYKNEPWH--RECFTCPHCNTSLA 454
           +C  C K  ++  +   +   H   + F+C HCN + A
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 246 KHFSCHCLVLYSIFLVPAIV 187
           KHF     ++YS+ L+ ++V
Sbjct: 54  KHFHIGLAIIYSMLLIMSLV 73


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 246 KHFSCHCLVLYSIFLVPAIV 187
           KHF     ++YS+ L+ ++V
Sbjct: 54  KHFHIGLAIIYSMLLIMSLV 73


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 347 RCVKCNKIIT 376
           RC  CNKI+T
Sbjct: 4   RCEPCNKILT 13


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 2   HEESRLHLTMKTVGQDRIRRARENN 76
           HE    HLT +    D +++  EN+
Sbjct: 119 HELKEKHLTQRINSCDLLKKRNEND 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,447
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)