Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E22
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   288   4e-79
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   288   4e-79
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   288   4e-79
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    42   9e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   0.38 
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   4.7  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   4.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   4.7  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   4.7  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    26   4.7  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   6.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   8.3  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  288 bits (707), Expect = 4e-79
 Identities = 132/186 (70%), Positives = 159/186 (85%)
 Frame = +1

Query: 34  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 573
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 574 KAGRAY 591
           KAGRA+
Sbjct: 180 KAGRAF 185


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  288 bits (707), Expect = 4e-79
 Identities = 132/186 (70%), Positives = 159/186 (85%)
 Frame = +1

Query: 34  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 573
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 574 KAGRAY 591
           KAGRA+
Sbjct: 180 KAGRAF 185


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  288 bits (707), Expect = 4e-79
 Identities = 132/186 (70%), Positives = 159/186 (85%)
 Frame = +1

Query: 34  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 573
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 574 KAGRAY 591
           KAGRA+
Sbjct: 180 KAGRAF 185


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 24/90 (26%), Positives = 48/90 (53%)
 Frame = +1

Query: 319 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 498
           L+ GN  P+  +P GT++  +      + +L R++G+ A +I    D K   V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219

Query: 499 KVLPSSNRGMVGIVAGGGRIDKPILKAGRA 588
           + +  ++   +G+V+      + + KAGR+
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS 249


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -2

Query: 545 PATIPTMPLLLDGNTFLAPDGSFTRVRLASGL*PITVAKLPEARASRPRSPIFSSKL 375
           PAT+P        N F  P   F   +L SGL    V+  P+       +P   S+L
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 446 PITVAKLPEARASRPRSPIFSSKLHTIV--PSGIA---PTGITLPTSRVAFLPQ*TN*PV 282
           P  +A LP       R+  FSSK  ++   P  +A      IT P+S V  +PQ T+   
Sbjct: 272 PWFIADLPTHSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQIPQPTDHSA 331

Query: 281 *RPSGAMNSS 252
             PS  M+ S
Sbjct: 332 LSPSKPMSIS 341


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 457 PDCDL*LWQNCQRREPVVLDHPSFLPNY 374
           PD +  LW +   RE +  D+P FL  Y
Sbjct: 86  PDYEYVLWTDESMREFIATDYPWFLTQY 113


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 300 LWQESNSRSWQCNACGCYA 356
           LW++       CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 300 LWQESNSRSWQCNACGCY 353
           LW+     S  CNACG Y
Sbjct: 22  LWRRGPDNSLLCNACGLY 39



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 300 LWQESNSRSWQCNACGCY 353
           LW+   S +  CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 523 LCCLMVTLFWHQMEALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLP 380
           LCCL+  L   ++ A +   W P     + Q    + PVV     F P
Sbjct: 246 LCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAP 293


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = -1

Query: 489 RWKLYSRTFGVRIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHYIANF*SCF 310
           RW L+    GV  +T++  K+   A   ++     F I      +HS H     N   CF
Sbjct: 106 RWLLHRIPGGV--ITWSTYKLFDEAETRANYPVRGFDIFMKHATKHSCH----FNILKCF 159

Query: 309 LATVNKLTSIKTFWSNEQFFARLELV 232
           L  +  L++     SN    + LELV
Sbjct: 160 LKLLMSLSAKLAVSSNSSTVSSLELV 185


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  QRKGAGSVFVSHTKKRKGAPKLRSLD 132
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,863
Number of Sequences: 5004
Number of extensions: 59892
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)