Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E22
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   301   2e-82
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.022
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    29   2.5  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical pr...    28   5.7  
X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.        28   5.7  
U41015-5|AAA82310.1|  166|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  301 bits (739), Expect = 2e-82
 Identities = 131/186 (70%), Positives = 159/186 (85%)
 Frame = +1

Query: 34  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
           + FRDPYK+KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K 
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120

Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 573
           GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+L
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLL 180

Query: 574 KAGRAY 591
           KAGR+Y
Sbjct: 181 KAGRSY 186


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 328 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 486
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 446 PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGI 336
           PI+   +P  R SRP  P+  S +H++ P  +  T +
Sbjct: 47  PISTLLVPPIRLSRPAFPLTISLIHSVHPHSLLATTV 83


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 144
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 145 HGYIKGVVKDIIHDPGRGAPLAVVHFR 225
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 145 HGYIKGVVKDIIHDPGRGAPLAVVHFR 225
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 442 IGHNPDAKRTRVKLPSGAKKVL 507
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 82  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 207
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical
           protein W09C2.1b protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 LWQESNSRSWQCNACGCY 353
           LW+   S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244


>Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical
           protein W09C2.1a protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 LWQESNSRSWQCNACGCY 353
           LW+   S ++ CNACG Y
Sbjct: 299 LWRRDGSGNYLCNACGLY 316


>X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 LWQESNSRSWQCNACGCY 353
           LW+   S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244


>U41015-5|AAA82310.1|  166|Caenorhabditis elegans Hypothetical
           protein F20B6.1 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 456 RIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHY 334
           R+ T +C +I  G      ITH   ++    T + S   HY
Sbjct: 40  RVYTESCTEIEIGGKSKDKITHRVLKVVVKATGQESKLNHY 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,907
Number of Sequences: 27780
Number of extensions: 360483
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)