Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E21
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 40 4e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 37 0.002
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 36 0.005
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.011
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.015
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.020
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 34 0.020
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 33 0.035
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.035
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.035
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.046
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.046
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.080
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.43
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 29 0.56
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.74
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.74
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 0.98
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 28 1.3
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 1.3
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.3
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.3
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 4.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 4.0
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.2
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.2
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 25 9.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.1
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 69 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGFR 245
+ +++VG + A++ ++ D F YG + + + GF FVE ED RDA D + F+
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQ 58
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 72 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIR 236
C +YVG++ ++ ++ D F GP+++ + + P G+ F E+ DP A A+R
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 237 GFRIGRYNICGRR 275
+ Y+ RR
Sbjct: 65 --NLNNYDAGTRR 75
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 37.1 bits (82), Expect = 0.002
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +3
Query: 54 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAFVEFEDPRDA 221
MSR +YV + EL F +GPL + R FAFVE+ED RDA
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDA 60
Query: 222 EDA---IRGFRIGR 254
EDA + G R+ R
Sbjct: 61 EDAYYEVHGRRLER 74
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 75 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 239
KIY+ +L N + ++ + +G L + + +N GF F EF++P DAE AI G
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAI 233
++VG+L + ++ L +AF +G + +V + R +AFVEF++P DA++A+
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 75 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFED 209
+++VG+LGN+ + L AFS Y L V R+ GF FV F+D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 75 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 239
++++ +L + ++ +L+ F +G L V + NP GFA+++F DA+DA+R
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADDAVRA 380
Query: 240 F 242
+
Sbjct: 381 Y 381
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIR 236
+++G+L ++ + E+E+AF +G + ++ + + AFV F + RDA +R
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVR 352
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 33.1 bits (72), Expect = 0.035
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 379 RCYDCGDRGHYARDC 423
RCY+CG+ GH AR+C
Sbjct: 18 RCYNCGENGHQAREC 32
Score = 29.9 bits (64), Expect = 0.32
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 382 CYDCGDRGHYARDC 423
CY CG GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 29.1 bits (62), Expect = 0.56
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 382 CYDCGDRGHYARDC 423
CY CG GH ARDC
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 28.3 bits (60), Expect = 0.98
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 382 CYDCGDRGHYARDC 423
CY CG GH RDC
Sbjct: 60 CYACGTAGHLVRDC 73
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.035
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 69 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFEDPRDAEDAI- 233
DC IYVG+L S L D F+ G + +A P GF V+FE+ DA +I
Sbjct: 280 DC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIE 338
Query: 234 --RGFRIG 251
G+R G
Sbjct: 339 KLNGYRYG 346
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAFVEFEDPRDAEDAIR 236
+YVG+L ++ ++ FS G +R + + + P GF FVE+ + +DA D+++
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLK 91
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 32.7 bits (71), Expect = 0.046
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAI 233
+YVG++ + + EL+ F+ G + V + +P GFA++EF +P +A+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 32.7 bits (71), Expect = 0.046
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI 233
+YVG+L + ++ L + F+ GP+ ++ V R+ G+A+V F + D E A+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.9 bits (69), Expect = 0.080
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Frame = +3
Query: 69 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---------PPGFAFVEFEDPRDA 221
D +++VG L + K E+ F G +R V + P G AFV F + D
Sbjct: 43 DFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDV 102
Query: 222 EDAI 233
+ AI
Sbjct: 103 DKAI 106
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIR 236
++V +L + +L + FS GP+++ V NP G+ FV F DA+ A +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.56
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIR 236
++VG++ + S+ ++ + F+ GP++ + +P G+ F EF D A+R
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.74
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +3
Query: 72 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAI 233
C ++VG L N L F YG + V + G+ +V+FE P A+ A+
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 28.7 bits (61), Expect = 0.74
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 206
+YV +L S + FS YG ++++W+ +P A V +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 0.98
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI 233
++VG+L A + L F G + V + R+P GFA+++F+D + A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 206
+YVG L + + ++ FS +GP+ + ++RN +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI 233
IY+G+L + ++ ++ FS +G ++ + R+ GFAF+++ED R A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 60 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAE 224
R D IY+G+L + L + GP+ N+ + R + GF F EF +D E
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 225 DA 230
A
Sbjct: 67 YA 68
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 123 EDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRG 239
E+ YG + ++ V N G FV+FE+ AE AI G
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITG 573
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Frame = +3
Query: 69 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV----------ARNPPGFAFVEFEDPRD 218
+ IYVG+L + +L + F +G + +++P FAF+ FE+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 219 AEDAI 233
A++AI
Sbjct: 79 ADNAI 83
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFEDPRDAEDAI 233
IYVG+L N + +L AFS R + + N P FVEFE+ A A+
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAM 656
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 382 CYDCGDRGHYARDC 423
C CG GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 544 SSALWIATGNG--SGCVTWN-RTAVTGNVYVCETSNDCVYAFESNRVHNALCHHNHSSGH 374
S A +I GNG +G + +N TA T Y T D +A N H NHS+ H
Sbjct: 294 SLAPFIVEGNGIKNGLLHYNMETAETDESY---TDLDDTFARLKNLSQR---HTNHSTDH 347
Query: 373 HMDVV 359
H D V
Sbjct: 348 HDDTV 352
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 5.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 382 CYDCGDRGHYARDC 423
CY CG +GH+ + C
Sbjct: 185 CYRCGQKGHWIQAC 198
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI 233
I V + A++ ++ED F+ +GP++N+ + + G+A +E+ A+ A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 243 RIGRYNICGRRASALE 290
R+G YN CGRR LE
Sbjct: 233 RVGIYNDCGRRPCQLE 248
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 78 IYVGDLGNNASKPELEDAFSYYGPLRNVW 164
IYVG++ + S E+ FS YG + +++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 426 SKA*TQSFEVSQTYTFPVTAVRFQVTQPLPFPVAIQSAL 542
S + +QSF TY+ P T + +V+ L P ++QS++
Sbjct: 694 SSSDSQSFS-GTTYSDPTTTITSEVSSILSSPTSMQSSV 731
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,302
Number of Sequences: 5004
Number of extensions: 41429
Number of successful extensions: 166
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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