Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E19
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    27   2.6  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   6.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   7.9  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 25  FMPFSIGKRTCIGQTLVTTMSFTMFANIVQEFDVAAENADDLVQIPACVALP 180
           ++PF  G+  CIG+        T+ +  V ++          V   + VALP
Sbjct: 432 YLPFGAGRHRCIGEQFAYMHLSTIISKFVHDYTWTLIGKVPNVDYSSMVALP 483


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 245 LTLYVAMCSLLHILLISIAVVVLP 316
           LT +V++C  L I+L  I +V++P
Sbjct: 40  LTFFVSLCVFLSIILPLIFLVIIP 63


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 89  SQCSLTSYRSSTSQR--KMPTIWYKYRLVLPYPKTLIIYILYRESTEVYSTVSKLTLYVA 262
           S+  +TS   S+ Q   K+PT ++ Y  V P+   +  YI Y    ++YS   +   Y+A
Sbjct: 3   SKALITSPDISSGQLYIKLPTFFHLY--VWPFALFVYPYIGYVYQNKLYSEEVRYLTYIA 60

Query: 263 MCSLLHIL 286
           +   +H L
Sbjct: 61  V-GTIHAL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,508
Number of Sequences: 5004
Number of extensions: 45859
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)