Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E18
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    75   4e-15
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    75   4e-15
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   2.9  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   5.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   8.8  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    24   8.8  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 48/110 (43%), Positives = 57/110 (51%)
 Frame = +1

Query: 106 MKLNVSYPGNVDVMKLF*SGG*AQAPYLL*KAYGR*SLMQIFYATNGKVMFSVLPAVTTS 285
           MKLN+SYP N    KL       +    + K  G+              +F +       
Sbjct: 1   MKLNISYPAN-GTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGG-NDK 58

Query: 286 SGFPMKQGVLTNSRVRLLMSKVHSCYRPRRDCERKRKSVRGCIVDANLSV 435
            GFPM QGVL   RVRLL+   H CYRPRRD ERKRKSVRGCIV  +L+V
Sbjct: 59  QGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAV 108



 Score = 31.5 bits (68), Expect = 0.058
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 225 DLLCDEWKGYVLRVAGGNDKQWLPYETG 308
           D +  E+ GYV ++ GGNDKQ  P   G
Sbjct: 39  DSVGPEFAGYVFKITGGNDKQGFPMFQG 66



 Score = 30.7 bits (66), Expect = 0.10
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 158 EVVDEHKLRIFYEKRMGAEV 217
           E+ D+ +LR+F EKRMG EV
Sbjct: 17  EIDDDRRLRVFMEKRMGQEV 36


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 48/110 (43%), Positives = 57/110 (51%)
 Frame = +1

Query: 106 MKLNVSYPGNVDVMKLF*SGG*AQAPYLL*KAYGR*SLMQIFYATNGKVMFSVLPAVTTS 285
           MKLN+SYP N    KL       +    + K  G+              +F +       
Sbjct: 1   MKLNISYPAN-GTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGG-NDK 58

Query: 286 SGFPMKQGVLTNSRVRLLMSKVHSCYRPRRDCERKRKSVRGCIVDANLSV 435
            GFPM QGVL   RVRLL+   H CYRPRRD ERKRKSVRGCIV  +L+V
Sbjct: 59  QGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAV 108



 Score = 31.5 bits (68), Expect = 0.058
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 225 DLLCDEWKGYVLRVAGGNDKQWLPYETG 308
           D +  E+ GYV ++ GGNDKQ  P   G
Sbjct: 39  DSVGPEFAGYVFKITGGNDKQGFPMFQG 66



 Score = 30.7 bits (66), Expect = 0.10
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 158 EVVDEHKLRIFYEKRMGAEV 217
           E+ D+ +LR+F EKRMG EV
Sbjct: 17  EIDDDRRLRVFMEKRMGQEV 36


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -2

Query: 254 ITFPF---VA*KICIKLQRPYAFHRRY 183
           + FPF    A  IC+K+Q P+ FH  +
Sbjct: 425 VAFPFDYLPARFICLKVQNPFVFHHSF 451


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 334 LLMSKVHSCYRPRRDCERKRKSVRGCIVDANL 429
           LL+S+  SC+   + CER RK++  C V  ++
Sbjct: 241 LLISR--SCFNDDQACERIRKNLEQCSVSQDV 270


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 271 AVTTSSGFPMKQGVLTNSRVRLLMSKVHS 357
           A  T SGFP+ Q   T SRV  L S+ HS
Sbjct: 58  AEDTFSGFPLSQSRTTVSRVS-LGSRQHS 85


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 173 AHPPLQNNFMTSTLPGYETFNFMTAISPFE 84
           AHP   +  +   L  Y  +NF T + P E
Sbjct: 450 AHPAKFDKAVNLALSSYSDYNFNTQVLPIE 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,906
Number of Sequences: 5004
Number of extensions: 27236
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)